View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_22 (Length: 371)
Name: NF17649_low_22
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_22 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 371
Target Start/End: Complemental strand, 18601247 - 18600871
Alignment:
| Q |
9 |
gataatacttgttcgtataaaataaaataatatgcatagtggacatgagggtcnnnnnnnagaaaaaagtagtagacatgagggtgttattttatgaaaa |
108 |
Q |
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| T |
18601247 |
gataatacttgttcgtataaaataaaataatatgcatagtggacatgagggtctttttttagaaaataa-agtggacatgagggtgttattttatgaaaa |
18601149 |
T |
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| Q |
109 |
ataattataaaattcaattactac----taagaatatctagatgatactatagttagctatgcatgcatattccccatatata--------------gta |
190 |
Q |
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| T |
18601148 |
ataattataaaattcaattactacgtactaagaatatctagatgatactatagt-agttatgcatgcatattccccatatatatatatatatatatagta |
18601050 |
T |
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| Q |
191 |
tagaataggtagtcattacgacaagaattctatagaaaaactacatagactcttgatatgggtgatccaactcctcttctgagccaacccaataacacta |
290 |
Q |
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| T |
18601049 |
tagaataggtagtcattacaacaagaattctatagaaaaactaca--gactcttgatatgggtgatccaactcctcttctgagccaacccaataacacca |
18600952 |
T |
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| Q |
291 |
gtgacacaaaaacatcaccaaataaacaccttcattctcttggcttcacaatagaaaagtgcataggtgaactcaattgga |
371 |
Q |
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| T |
18600951 |
gtgacacaaaaacatcaccaaataaacaccttcattctcttggcttcacaatagaaaagtgcataggtgaactcaattgga |
18600871 |
T |
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