View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_23 (Length: 365)
Name: NF17649_low_23
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 38179202 - 38179551
Alignment:
| Q |
18 |
aaatgcgcgagagaaaacgagagaaagcgagagaattggcgttattgtgattggttgagagaatttaaaggcgcgattgtgcggtgtcgtgtcgttttga |
117 |
Q |
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| T |
38179202 |
aaatgcgcgagagaaaacgagagaaagcgagagaattggcgttattgtgattggttgagagaatttaaaggcgcgattgtgcggtgtcgtgtcgttttga |
38179301 |
T |
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| Q |
118 |
aaaattgttatttttgacgggtttgaattaatggtactcgttatttctttttgtgaaaaaattattccannnnnnnatattcatgacttggttttta--- |
214 |
Q |
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| T |
38179302 |
aaaattgttatttttgacgggtttgaattaatggtactcgttatttctttttgtgaaaaaattattccatttttttatattcatgacttggtttttattg |
38179401 |
T |
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| Q |
215 |
--------------ttgctaccacccaatcctttcttttttctagctgnnnnnnnagtgttgttgttctaaaaatatactgttagtaactgattttgtgg |
300 |
Q |
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| T |
38179402 |
tatcgtgggaattcttgcaaccacccaatcctttcttttttctagctg-ttttttagtgttgttgttctaaaaatatactgttagtaactgattttgtgg |
38179500 |
T |
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| Q |
301 |
tcaaatataggaagccaagaaaaatatatttgcaaaaataattagttatgt |
351 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38179501 |
tcaaatattggaagccaagaaaaatatatttgcaaaaataattagttatgt |
38179551 |
T |
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