View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_26 (Length: 341)
Name: NF17649_low_26
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 5822569 - 5822904
Alignment:
| Q |
16 |
cagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgagggttgttcttgtgtttctcacaaagttccggcaaaaatactcctagagt |
115 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822569 |
caggaccaagtgcagctcctgagctagtaagttcaattgtagcacgacgagggttgttcttgtgtttctcacaaagttccggcaaaaatactcctagagt |
5822668 |
T |
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| Q |
116 |
cacatgaatgcagcttagttattgtataacaaaaataaaaggtgaaaatcaaagcagccctaatgttacatatactaaattatttgaacg---------- |
205 |
Q |
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| T |
5822669 |
cacatgaatgcagcttagttattgtataacaaaaataaaaggtgaaaatcaaagcagccctaatgttacatatactaaattatttgaacgtggattctcc |
5822768 |
T |
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| Q |
206 |
--------ttatcttttagtagagctcattacccacttgaactgaatcacttagttattttcttatatcatgtattggtcttagggaagt-aannnnnnn |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
5822769 |
ggaacgatttatcttttagtagagctcattacccacttgaactgaatcacttagttattttcttatatcatgtattggtctt-gggaagtaaattttttt |
5822867 |
T |
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| Q |
297 |
nnattctcattgactttgacaaatgtatgtgatgatg |
333 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
5822868 |
ttattctcattgactttgacaaatgtatgtgatgatg |
5822904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 5829320 - 5829193
Alignment:
| Q |
16 |
cagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgagggttgttcttgtgtttctcacaaagttccggcaaaaatactcctagagt |
115 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
5829320 |
caggaccaagtgcagctcctgagctagtaagttcaattgtagcacgacgagggttggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgt |
5829221 |
T |
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| Q |
116 |
cacatgaatgcagcttagttattgtata |
143 |
Q |
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||||| |||||||||||||||| ||||| |
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| T |
5829220 |
cacattaatgcagcttagttatcgtata |
5829193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 206 - 333
Target Start/End: Complemental strand, 5829102 - 5828973
Alignment:
| Q |
206 |
ttatcttttagtagagctcattacccacttgaactgaatcacttagttattttcttatatcatgtattggtcttagggaagtaa---nnnnnnnnnattc |
302 |
Q |
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||||||| ||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
5829102 |
ttatcttctagtatagctcattaccaacttgaactgaatcagttaattattttcttatatcatgtatttgtctt-gggaagtaaaatattttttttattc |
5829004 |
T |
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| Q |
303 |
tcattgactttgacaaatgtatgtgatgatg |
333 |
Q |
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| T |
5829003 |
acattgactttgacaaatgtatgtgatgatg |
5828973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 5832029 - 5832121
Alignment:
| Q |
18 |
gggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgagggttgttcttgtgtttctcacaaagttccggcaaaaatactcct |
110 |
Q |
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||||||| ||||||||| ||||| ||| |||| ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| |
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| T |
5832029 |
gggccaaatgcagctccggagctcacaagctcgaccatagcacgacgagggttggtcttgtgtttctcacatagttctggcaaaaatactcct |
5832121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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