View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_27 (Length: 339)
Name: NF17649_low_27
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_27 |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 68 - 339
Target Start/End: Original strand, 29753802 - 29754067
Alignment:
| Q |
68 |
ttcaacttatccatattgtagtttatgtttaactacgtagacttttctttatacttgttagtttcnnnnnnnaccttttataaacttttaataatgtata |
167 |
Q |
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| T |
29753802 |
ttcaacttatgcatatt--agtttatgtttaactacgaaggcttttctctatacttgttagtttctttttttaccttttataaacttttaataatgcata |
29753899 |
T |
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| Q |
168 |
atttctttaatttagattgttattgacttgtggaattatttgattttttgaaaaattgatcattttctacgaggaaagtttgtgcgtgggagtgaaaaag |
267 |
Q |
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| T |
29753900 |
atttctttaatttagattgttattgacttgtggaattatttgattttttgaaaaattgatcattttctaagaggaaagttt----gtgggagtgaaagag |
29753995 |
T |
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| Q |
268 |
atgaacaaggaatatcttatacatcttaacctggtaaagttttaagaataaaagtggtaacttctacacctc |
339 |
Q |
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| T |
29753996 |
atgaacaaggaatatcttatatatcttaacatgttaaagtttcaagaatagaagtggtaacttctacacctc |
29754067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 68 - 339
Target Start/End: Original strand, 4113120 - 4113391
Alignment:
| Q |
68 |
ttcaacttatccatattgtagtttatgtttaactacgtagacttttctttatacttgttagtttcnnnnnnn-accttttataaacttttaataatgtat |
166 |
Q |
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| T |
4113120 |
ttcaacttatgcatattgtagtttatgtttaactacaaaagtttttctttatacttgttagtttcttttttttaccttttataagcttttaataatgctt |
4113219 |
T |
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| Q |
167 |
aatttctttaatttagattgttattgacttgtggaattatttgattttttgaaaaattgatcattttctacgaggaaagtttgtgcgtgggagtgaaaaa |
266 |
Q |
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| T |
4113220 |
aatttctttaatttagattgttattgacttgtggaattatttgattttttgaaaaattgatcattttttaaaaggaaagttt----gtgggagtgaaaga |
4113315 |
T |
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| Q |
267 |
gatgaacaaggaatatcttatacatcttaacctggtaaagttttaagaat---aaaagtggtaacttctacacctc |
339 |
Q |
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| T |
4113316 |
gatgaacaaagaatatcttatacatcacaacctgttaaagttttaagaattgaagaaatggtaacttctacacctc |
4113391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 68 - 339
Target Start/End: Complemental strand, 3776879 - 3776612
Alignment:
| Q |
68 |
ttcaacttatccatattgtagtttatgtttaactacgtagacttttctttatacttgttagtttcnnnnnnnacc-ttttataaacttttaataatgtat |
166 |
Q |
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| T |
3776879 |
ttcaactaatgcatattgtagtttatgtttaactacgaaggcttttctttatacttgttagtttctttttttacctttttataaacttttaataatgcat |
3776780 |
T |
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| Q |
167 |
aatttctttaatttagattgttattgacttgtggaattatttgattttttgaaaaattgatcattttctacgaggaaagtttgtgcgtgggagtgaaaaa |
266 |
Q |
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| T |
3776779 |
aatttctttaatttagattgttattgacttgtggaattatttgattttttgaaaaattgatcattttttaaaaggaaagttt----gtgggagtgaaaga |
3776684 |
T |
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| Q |
267 |
gatgaacaaggaatatcttatacatcttaacctggtaaagttttaagaataaaagtggtaacttctacacctc |
339 |
Q |
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| T |
3776683 |
gatgaaaaaggaatatcttatacatcttaacct-ttaaagtttcaagaatagaagtggtaacttctacacctc |
3776612 |
T |
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