View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_28 (Length: 337)
Name: NF17649_low_28
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 47 - 319
Target Start/End: Complemental strand, 34947178 - 34946906
Alignment:
| Q |
47 |
ctaatcataaaagttagaaatggacttaacgttcaacgatcatattttattttatcaaatatttaatgtcagaaaaagagtggttgtgcttagaaacttt |
146 |
Q |
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| T |
34947178 |
ctaatcataaaagttagaaatggacttaacgttcaacgatcatattttattttatcaaatatttaatgtcagaaaaagagtggttgtgcttagaaacttt |
34947079 |
T |
|
| Q |
147 |
cagatcggnnnnnnnaaaattaatcatccaaaaccgacatgaactgcatataatttgatctttagatcggatgacttttactcttaaaccgatccaaatc |
246 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34947078 |
cagatcggttttattaaaattaatcatccaaaaccgacatgaaccgcatataatttgatctttagatcggatgacttttactcttaaaccgattcaaatc |
34946979 |
T |
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| Q |
247 |
ggactgcgaacaccttatccatgacaccctttgtatggtgttgttggttaatgtaaagacactaccacaatgc |
319 |
Q |
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| T |
34946978 |
ggactgcaaacaccttatccatgacaccctttgtatggtgttgttggttaatgtaaagacactaccacaatgc |
34946906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 41580431 - 41580494
Alignment:
| Q |
162 |
aaaattaatcatccaaaaccgacatgaactgcatataatttgatctttagatcggatgactttt |
225 |
Q |
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| T |
41580431 |
aaaattaatcatccaaaaccgaaccgaactgcatataattttatctttggatcggatgagtttt |
41580494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 36069798 - 36069846
Alignment:
| Q |
162 |
aaaattaatcatccaaaaccgacatgaactgcatataatttgatcttta |
210 |
Q |
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| T |
36069798 |
aaaattagtcatccaaaaccaatatgaactgcatataattttatcttta |
36069846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 35747708 - 35747805
Alignment:
| Q |
163 |
aaattaatcatccaaaaccgacatgaactgcatataatttgatctttagatcggatgacttttactcttaaaccgatccaaatcggactgcgaacacc |
260 |
Q |
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|||||| |||||||||| ||| ||||| |||||||||||||| || ||||||||| |||| || ||||||||||||| ||||| || |||||| |
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| T |
35747708 |
aaattattcatccaaaatcgaactgaaccacatataatttgatcgttgaatcggatgagtttttgcctcaaaccgatccaaaccggaccgcaaacacc |
35747805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 1274138 - 1274086
Alignment:
| Q |
162 |
aaaattaatcatccaaaaccgacatgaactgcatataatttgatctttagatc |
214 |
Q |
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||||||||||||| |||||| | ||||| ||||||||||| ||||||||||| |
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| T |
1274138 |
aaaattaatcatctaaaaccaaactgaaccgcatataattttatctttagatc |
1274086 |
T |
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