View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17649_low_3 (Length: 569)
Name: NF17649_low_3
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 13 - 552
Target Start/End: Complemental strand, 55963843 - 55963291
Alignment:
| Q |
13 |
aaaatcttcacatcggcggcacaaattaa-tttacgcttttatagggtatgtgtcaacttcttagcaactcaaccgacctccattgtgttggctattgtg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
55963843 |
aaaatcttcacatcggcggcacaaattaaatttacgctcttatagggtatgtgtcaacttcttagcaactcaaccgacctccattgtgttggctattgcg |
55963744 |
T |
|
| Q |
112 |
tagctagagaaaataagt----------tatcatagggtatattataattatgttgagcctccgcccatcgcgataccaaatattcactaaaa--caacc |
199 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
55963743 |
tagctagagaaaataagtgtatatttgttatcatagggtatagtataattatgttgagcctccgcccatcgcgataccaaatattcactaaaaaacaacc |
55963644 |
T |
|
| Q |
200 |
atcttatccaaatactattagatcaatttaattttaaaatttgagttgtacttgtatctaactcaacttataaacataatttcaggcaattgtaatatct |
299 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55963643 |
atcttatccaaatattattagatcaatttacttttaaaatttgagttgtacttgtatctaactcaacttataaacataatttcaggcaattgtaatatct |
55963544 |
T |
|
| Q |
300 |
cattccattcaatggaggacttttaactgagtttactatggtacaaattaaataaaactatggattcaaaaacattgctttgacaaataaactatctagt |
399 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55963543 |
cattccattcaatggaggacttttaaccgagtttactatggtacaaattaaataaaactatggattcaaaaacattgctttgacaaataaactatctagt |
55963444 |
T |
|
| Q |
400 |
ttgcataatcataactaaaatcagaaacgccaaccatagcaataaggacttgagaaacaatgtagaaaccacctccaagaatagcaatgatgagaattgc |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55963443 |
ttgcataatcataactaaaatcagaaacgccaaccatagcagtaaggacttgagaaacaatgtagaaaccacctccaagaatagcaatgatgagaattgc |
55963344 |
T |
|
| Q |
500 |
agtaattggattcttgagaagctcaaatataggcaccaaaatagtgtaaattg |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55963343 |
agtaattggattcttgagaagctcaaatataggcaccaaaatagtgtaaattg |
55963291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University