View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_30 (Length: 327)
Name: NF17649_low_30
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_30 |
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| [»] scaffold1738 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 5 - 311
Target Start/End: Complemental strand, 8396148 - 8395842
Alignment:
| Q |
5 |
gcataggtgtaaggtgatctaaacaaattttcttttctataaagtcaggtaactacaaagaatgaaagaataacacattaaaaaatgaattaaatgattt |
104 |
Q |
| |
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||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8396148 |
gcatatgtgtaagttgatctaaacaaagtttcttttctataaagtcaggtaactacaaagaatgaaagaataacacattaaaaaatgaattaaataattt |
8396049 |
T |
|
| Q |
105 |
atatgtcttagaatattttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacact |
204 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8396048 |
atatgtcttagaatattttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacact |
8395949 |
T |
|
| Q |
205 |
tcttcccaatcgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtttctaac |
304 |
Q |
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|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8395948 |
tcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtttctatc |
8395849 |
T |
|
| Q |
305 |
aagttga |
311 |
Q |
| |
|
||||||| |
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|
| T |
8395848 |
aagttga |
8395842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 33 - 311
Target Start/End: Original strand, 8405451 - 8405730
Alignment:
| Q |
33 |
tttcttttctataaagtcaggtaact-acaaagaatgaaagaataacacattaaaaaatgaattaaatgatttatatgtcttagaatattttgcttgcaa |
131 |
Q |
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||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8405451 |
tttcttttctacaaagtcatgtaacttacaaagaatgaaagaataacacattaaaaaatgaattaaataatttatatgtcttagaatattttgcttgcaa |
8405550 |
T |
|
| Q |
132 |
attcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaatcgcaaagccattttcat |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
8405551 |
attcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctcagatacacttcttcccaattgcaaagccattttcat |
8405650 |
T |
|
| Q |
232 |
ttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8405651 |
ttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttga |
8405730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 106 - 311
Target Start/End: Original strand, 8430796 - 8431001
Alignment:
| Q |
106 |
tatgtcttagaatattttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacactt |
205 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
8430796 |
tatgtcttagaaaattttgctggaaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttcccttagctctgatacactt |
8430895 |
T |
|
| Q |
206 |
cttcccaatcgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtttctaaca |
305 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8430896 |
tttcccaattgcaaagccatcttcatttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtttctatca |
8430995 |
T |
|
| Q |
306 |
agttga |
311 |
Q |
| |
|
|||||| |
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|
| T |
8430996 |
agttga |
8431001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 130 - 311
Target Start/End: Original strand, 8416753 - 8416934
Alignment:
| Q |
130 |
aaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaatcgcaaagccattttc |
229 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
8416753 |
aaattcatctatgtcaacaccttcgatgcgacaagaagctgattttgtggcacgttccctcagctctgatacatttcttcccaattgcaaagccattttc |
8416852 |
T |
|
| Q |
230 |
atttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8416853 |
atttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttga |
8416934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 122 - 311
Target Start/End: Complemental strand, 8376345 - 8376156
Alignment:
| Q |
122 |
ttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaatcgcaaag |
221 |
Q |
| |
|
||||| ||||||||||| || || | ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
8376345 |
ttgctggcaaattcatcaatttcgataccttccatgcgacaagaagctgattttgaggcaagttccctcagctctgatacacttcttcccaattgcaaag |
8376246 |
T |
|
| Q |
222 |
ccattttcatttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
8376245 |
ccattttcatttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgaatcaattgaagtttctatcaagttga |
8376156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 122 - 311
Target Start/End: Original strand, 8411661 - 8411850
Alignment:
| Q |
122 |
ttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaatcgcaaag |
221 |
Q |
| |
|
||||| |||||||||||||| || | || |||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
8411661 |
ttgctggcaaattcatctatttcgatactttccatgcgacaagaagctgattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaag |
8411760 |
T |
|
| Q |
222 |
ccattttcatttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttga |
311 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8411761 |
ccattttcaattcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttga |
8411850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 122 - 311
Target Start/End: Original strand, 8433759 - 8433948
Alignment:
| Q |
122 |
ttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaatcgcaaag |
221 |
Q |
| |
|
||||| |||||||||||||| || | || |||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
8433759 |
ttgctggcaaattcatctatttcgatactttccatgcgacaagaagctgattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaag |
8433858 |
T |
|
| Q |
222 |
ccattttcatttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttga |
311 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8433859 |
ccattttcaattcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtttctaacaagttga |
8433948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 8401418 - 8401363
Alignment:
| Q |
202 |
acttcttcccaatcgcaaagccattttcatttcaaatagctctccattttctcttt |
257 |
Q |
| |
|
||||||||||||| |||||||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
8401418 |
acttcttcccaatttcaaagccaatttaatttcaaataaatctccattttctcttt |
8401363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1738 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: scaffold1738
Description:
Target: scaffold1738; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 122 - 298
Target Start/End: Complemental strand, 177 - 1
Alignment:
| Q |
122 |
ttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaatcgcaaag |
221 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
177 |
ttgctggcaaattcatctatgtcaacaccttcgatgcgacaagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaag |
78 |
T |
|
| Q |
222 |
ccattttcatttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
77 |
ccattttcatttcaaatagctctccattttctcttttctctaaatctttctctcccaaagttgattcaattgaagtt |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 279
Target Start/End: Original strand, 55330474 - 55330625
Alignment:
| Q |
128 |
gcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaatcgcaaagccattt |
227 |
Q |
| |
|
||||||||||| | |||| |||| ||| ||| ||||| |||||||||| ||||| || |||| ||| || ||| |||||||||| ||||||||||| |
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|
| T |
55330474 |
gcaaattcatcaacatcaattcctttcattcgacaagaacctgattttgaagcaagctctctcatctcagaaacatttcttcccaacatcaaagccattt |
55330573 |
T |
|
| Q |
228 |
tcatttcaaatagctctccattttctcttttctctaaatctttctctcccaa |
279 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| |||||||||||| |||| |
|
|
| T |
55330574 |
tcatttcaaataactctccattttctctcatctcaaaatctttctcttccaa |
55330625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 273
Target Start/End: Original strand, 55335899 - 55336051
Alignment:
| Q |
121 |
tttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaatcgcaaa |
220 |
Q |
| |
|
|||||| |||||||||||||| || |||||||||| | | | ||| |||||||| ||||||| || ||||| || ||||||||||| || ||| |
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|
| T |
55335899 |
tttgctggcaaattcatctatagaaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaat |
55335998 |
T |
|
| Q |
221 |
gccattttcatttcaaatagctctccattttctcttttctctaaatctttctc |
273 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| || ||||||||||| |
|
|
| T |
55335999 |
gccattttcatttcaaatatctcaccattttctcttttttccaaatctttctc |
55336051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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