View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_33 (Length: 315)
Name: NF17649_low_33
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 5822881 - 5823184
Alignment:
| Q |
1 |
ctttgacaaatgtatgtgatgatggtaaataaaatagtagcattaacaaacaattgttaccttctccagcagccaaattgaagaaaaggtcaacaatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5822881 |
ctttgacaaatgtatgtgatgatggtaaataaaatagt-gcattaacaaacaattgttaccttctccagcagccaaattaaagaaaaggtcaacaatatt |
5822979 |
T |
|
| Q |
101 |
gggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822980 |
gggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacacca |
5823079 |
T |
|
| Q |
201 |
catgcttccacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcggtttcaccattgatattct |
300 |
Q |
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| T |
5823080 |
catgcttctacacattcgtctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttcaccattgatattct |
5823179 |
T |
|
| Q |
301 |
tctca |
305 |
Q |
| |
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||||| |
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| T |
5823180 |
tctca |
5823184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 5828996 - 5828693
Alignment:
| Q |
1 |
ctttgacaaatgtatgtgatgatggtaaataaaatagtagcattaacaaacaattgttaccttctccagcagccaaattgaagaaaaggtcaacaatatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5828996 |
ctttgacaaatgtatgtgatgatggtaaataaaatagt-gcattaacaaacaagtcttaccttctccagcagccaaattaaagaaaaggtcaacaatatt |
5828898 |
T |
|
| Q |
101 |
gggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5828897 |
gggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacacca |
5828798 |
T |
|
| Q |
201 |
catgcttccacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcggtttcaccattgatattct |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5828797 |
catgcttccacacattgatctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttcaccattgatattct |
5828698 |
T |
|
| Q |
301 |
tctca |
305 |
Q |
| |
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||||| |
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|
| T |
5828697 |
tctca |
5828693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 57 - 294
Target Start/End: Original strand, 5832814 - 5833051
Alignment:
| Q |
57 |
ttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaa |
156 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||||||||| || || ||||| | |||||| ||| || ||||| |||| ||||| | ||||||| |
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|
| T |
5832814 |
ttaccctctccagcagccatattgaagaaaaggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagtttgccggtgaattgtggctcaa |
5832913 |
T |
|
| Q |
157 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataac |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| ||||| |
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| T |
5832914 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctccactataac |
5833013 |
T |
|
| Q |
257 |
ttcagatgttcgacattgatactcggtttcaccattga |
294 |
Q |
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||||||||||| |||||||||||| |||||||||||| |
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| T |
5833014 |
ttcagatgttctacattgatactcaatttcaccattga |
5833051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 281
Target Start/End: Original strand, 24038434 - 24038658
Alignment:
| Q |
57 |
ttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaa |
156 |
Q |
| |
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|||||||| |||||||||||||||||| ||||||||||||||||||| || || | ||||||||| |||||||| ||| |||||| | ||||||| |
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| T |
24038434 |
ttaccttccccagcagccaaattgaagtaaaggtcaacaatattggggcaattttggtaacaagatgatgaacaaagtttggctgtgaattgtggctcaa |
24038533 |
T |
|
| Q |
157 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataac |
256 |
Q |
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|| ||||| || ||||| || ||| || | || ||||| |||||||||| ||||||||| ||||||||||||||| | || |||| ||||| || || |
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| T |
24038534 |
gcaatgcatcggaagaaattccgacaaaattcctttcaactccacatgctttcacacattgatctgtctctatgtatcccgccattcgctccaacactac |
24038633 |
T |
|
| Q |
257 |
ttcagatgttcgacattgatactcg |
281 |
Q |
| |
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||| ||||| | ||||||||||||| |
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|
| T |
24038634 |
ttctgatgtcctacattgatactcg |
24038658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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