View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_34 (Length: 313)
Name: NF17649_low_34
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 1743769 - 1744035
Alignment:
| Q |
1 |
ctcgagagtagccgagaaaggaataaaacagtggaatcatgtattgttagagagaatttaactcggtttgtaaaggaaaggaatttcttgcagaccatag |
100 |
Q |
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| T |
1743769 |
ctcgagagtagccgagaaaggaatagaatagtggaatcatgtattgttaaagaaaatttcacttggtttgtaatggaaaggaatttcttgcagaccatag |
1743868 |
T |
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| Q |
101 |
aaacagactccaaatcatgtccttggtcaaggagtttgaagattgattcccaacattcttgtggaaaatctttcaccaacatatttgatataat-----t |
195 |
Q |
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| T |
1743869 |
aaacagactccaaatcttttccttggccaaggaatttgaagattgattcccaacattcttgaggaaaatctttcaataacatatttgatataataaatgt |
1743968 |
T |
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| Q |
196 |
tgatctagaaagttaagatgagaatgatcaacaaatgtaatggcttaatcatttatcaactcaataa |
262 |
Q |
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| T |
1743969 |
tgatctagaaagttaagatgagaatgatcaacaaatttaatggcttaatcatttataaactcaataa |
1744035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 2006609 - 2006422
Alignment:
| Q |
5 |
agagtagccgagaaaggaataaaacagtggaatcatgtattgttagagagaatttaactcggtttgtaaaggaaaggaatttcttgcagaccatagaaac |
104 |
Q |
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| T |
2006609 |
agagtagccgaggaaggaatggaacagtgggatcatgtactgttagagatgctttaactcggtttgtaatggaaaggaatttcttgcagaccatagaaac |
2006510 |
T |
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| Q |
105 |
agactccaaatcatgtccttggtcaaggagtttgaagattgattcccaacattcttgtggaaaatctttcaccaacatatttgatata |
192 |
Q |
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| T |
2006509 |
agactccaaatcatctccttggccaaggaatcttaagattgattcccaacattcttgaggaaaatctttcactaatatatttgatata |
2006422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 1749110 - 1749187
Alignment:
| Q |
207 |
gttaagatgagaatgatcaacaaatgtaatggcttaatcatttatcaactcaataaaccaatcatatttgagtgaaagt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| | | |||||| |||||| || |||| ||||||||| |
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| T |
1749110 |
gttaagatgagaatgatcaacaaatgtaatggcttaataatttcttagctcaatgaaccaaccacattt-agtgaaagt |
1749187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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