View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_35 (Length: 308)
Name: NF17649_low_35
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 31191212 - 31191501
Alignment:
| Q |
1 |
tctttggtgtaatctatgtgaaagtcaactagtcaacaaatctcaattttgaagcatccgacaaatagtgggtaccacagattttaaaagctnnnnnnnn |
100 |
Q |
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| T |
31191212 |
tctttggtgtaatctatgtgaaagtcaactagtcaacaaatctcaattttgaagcatccgacaaatagtgggtaccacagattttaaaagctaaaaaaaa |
31191311 |
T |
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| Q |
101 |
-gttggatgagaataatgcaaagttccatatattcactcattaaattatttgtaatatttgctttaacaacaatctttttgtattgaatgaaatttatta |
199 |
Q |
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| T |
31191312 |
agttggatgagaataatgcaaagttccatatattcactcattaaattatttgtaatatttgctttaacaacaatctttttgtattgaatgaaatttatta |
31191411 |
T |
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| Q |
200 |
tgtcattctttatgaaagtcattctcaaaataatatgatcaactttaattttactcttaataatagagatccttttttctatgtgagacc |
289 |
Q |
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| T |
31191412 |
tgtcattctttatgaaagtcattctcaaaataatatgatcaactttaattttactcttaataatagagatccttttttctatgtgagacc |
31191501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 31204994 - 31205071
Alignment:
| Q |
15 |
tatgtgaaagtcaactagtcaacaaatctcaa-ttttgaagcatccgacaaatagtgggtaccac-agattttaaaag |
90 |
Q |
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| T |
31204994 |
tatgtcaaagtcaactagtcaataaatctcaacttttgaagcatccgacaaatggtgggtaccacgtgattttaaaag |
31205071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 31205326 - 31205367
Alignment:
| Q |
248 |
ttttactcttaataatagagatccttttttctatgtgagacc |
289 |
Q |
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| T |
31205326 |
ttttactcttaataatagagatccttttttctatgtgtgacc |
31205367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 31173780 - 31173830
Alignment:
| Q |
109 |
agaataatgcaaagttccatatattcactcattaaattatttgtaatattt |
159 |
Q |
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|||| |||||| |||||||||||||||||||| ||||| |||||||||||| |
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| T |
31173780 |
agaacaatgcatagttccatatattcactcatcaaattgtttgtaatattt |
31173830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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