View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17649_low_37 (Length: 304)

Name: NF17649_low_37
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17649_low_37
NF17649_low_37
[»] chr5 (7 HSPs)
chr5 (1-285)||(11504282-11504566)
chr5 (1-285)||(11511676-11511960)
chr5 (1-285)||(11519052-11519336)
chr5 (1-285)||(11526457-11526741)
chr5 (1-285)||(11533867-11534151)
chr5 (1-285)||(11496955-11497239)
chr5 (1-285)||(11541284-11541568)
[»] scaffold1005 (1 HSPs)
scaffold1005 (1-285)||(2427-2711)
[»] chr1 (5 HSPs)
chr1 (1-251)||(41556218-41556468)
chr1 (1-182)||(44179781-44179962)
chr1 (1-182)||(44206912-44207093)
chr1 (190-255)||(44180824-44180889)
chr1 (188-251)||(44208046-44208109)
[»] chr4 (1 HSPs)
chr4 (44-183)||(4860380-4860519)
[»] chr6 (2 HSPs)
chr6 (34-165)||(14927142-14927273)
chr6 (190-251)||(14929190-14929251)
[»] chr2 (1 HSPs)
chr2 (201-251)||(45048279-45048329)


Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 11504282 - 11504566
Alignment:
Q  1 gctggtaaattgagtgctgcagagttgagtaatattatgacagtggttgcgaatcctcgtcaattcaagcttccagattggtttttgaacagaaagaaag 100  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  11504282 gctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccatattggtttttgaacagaaagaaag 11504381  T
Q  101 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaagctcagggatgatcttgagagactcaagaaaattcgtaatcaccgggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11504382 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaagctcagggatgatcttgagagactcaagaaaatccgtaatcaccgggg 11504481  T
Q  201 tttgaggcactactggcgccttcgtgttcgtggtcagcataccacgactacaggctgactgttggtgtctcaaagaagcgttaag 285  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11504482 tttgaggcactactggggcctttgtgttcgtggtcagcataccacgactacaggctgactgttggtgtctcaaagaagcgttaag 11504566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 11511676 - 11511960
Alignment:
Q  1 gctggtaaattgagtgctgcagagttgagtaatattatgacagtggttgcgaatcctcgtcaattcaagcttccagattggtttttgaacagaaagaaag 100  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  11511676 gctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccatattggtttttgaacagaaagaaag 11511775  T
Q  101 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaagctcagggatgatcttgagagactcaagaaaattcgtaatcaccgggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11511776 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaagctcagggatgatcttgagagactcaagaaaatccgtaatcaccgggg 11511875  T
Q  201 tttgaggcactactggcgccttcgtgttcgtggtcagcataccacgactacaggctgactgttggtgtctcaaagaagcgttaag 285  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11511876 tttgaggcactactggggcctttgtgttcgtggtcagcataccacgactacaggctgactgttggtgtctcaaagaagcgttaag 11511960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 11519052 - 11519336
Alignment:
Q  1 gctggtaaattgagtgctgcagagttgagtaatattatgacagtggttgcgaatcctcgtcaattcaagcttccagattggtttttgaacagaaagaaag 100  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  11519052 gctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccatattggtttttgaacagaaagaaag 11519151  T
Q  101 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaagctcagggatgatcttgagagactcaagaaaattcgtaatcaccgggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11519152 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaagctcagggatgatcttgagagactcaagaaaatccgtaatcaccgggg 11519251  T
Q  201 tttgaggcactactggcgccttcgtgttcgtggtcagcataccacgactacaggctgactgttggtgtctcaaagaagcgttaag 285  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11519252 tttgaggcactactggggcctttgtgttcgtggtcagcataccacgactacaggctgactgttggtgtctcaaagaagcgttaag 11519336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 11526457 - 11526741
Alignment:
Q  1 gctggtaaattgagtgctgcagagttgagtaatattatgacagtggttgcgaatcctcgtcaattcaagcttccagattggtttttgaacagaaagaaag 100  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  11526457 gctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccatattggtttttgaacagaaagaaag 11526556  T
Q  101 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaagctcagggatgatcttgagagactcaagaaaattcgtaatcaccgggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11526557 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaagctcagggatgatcttgagagactcaagaaaatccgtaatcaccgggg 11526656  T
Q  201 tttgaggcactactggcgccttcgtgttcgtggtcagcataccacgactacaggctgactgttggtgtctcaaagaagcgttaag 285  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11526657 tttgaggcactactggggcctttgtgttcgtggtcagcataccacgactacaggctgactgttggtgtctcaaagaagcgttaag 11526741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 11533867 - 11534151
Alignment:
Q  1 gctggtaaattgagtgctgcagagttgagtaatattatgacagtggttgcgaatcctcgtcaattcaagcttccagattggtttttgaacagaaagaaag 100  Q
    ||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  11533867 gctggtaaattgagtgctgcagaattggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccatattggtttttgaacagaaagaaag 11533966  T
Q  101 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaagctcagggatgatcttgagagactcaagaaaattcgtaatcaccgggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11533967 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacaggaagctcagggatgatcttgagagactcaagaaaatccgtaatcaccgggg 11534066  T
Q  201 tttgaggcactactggcgccttcgtgttcgtggtcagcataccacgactacaggctgactgttggtgtctcaaagaagcgttaag 285  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11534067 tttgaggcactactggggccttcgtgttcgtggtcagcataccacgactacaggctgactgttggtgtctcaaagaagcgttaag 11534151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 11496955 - 11497239
Alignment:
Q  1 gctggtaaattgagtgctgcagagttgagtaatattatgacagtggttgcgaatcctcgtcaattcaagcttccagattggtttttgaacagaaagaaag 100  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11496955 gctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccagattggtttttgaacagaaagaaag 11497054  T
Q  101 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaagctcagggatgatcttgagagactcaagaaaattcgtaatcaccgggg 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||    
T  11497055 attacaaggatggcaaattctctcaacttgtatccaatcaacttgacatgaagctgagggatgatcctgagagactcaagaaaatccgtaatcaccgggg 11497154  T
Q  201 tttgaggcactactggcgccttcgtgttcgtggtcagcataccacgactacaggctgactgttggtgtctcaaagaagcgttaag 285  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11497155 tttgaggcactactggggccttcgtgttcgtggtcagcataccacgactataggctgactgttggtgtctcaaagaagcgttaag 11497239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 11541284 - 11541568
Alignment:
Q  1 gctggtaaattgagtgctgcagagttgagtaatattatgacagtggttgcgaatcctcgtcaattcaagcttccagattggtttttgaacagaaagaaag 100  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11541284 gctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccagattggtttttgaacagaaagaaag 11541383  T
Q  101 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaagctcagggatgatcttgagagactcaagaaaattcgtaatcaccgggg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||| |||||    
T  11541384 attacaaggatggcaaattttctcaagttgtatccaatcaacttgacatgaaattcagggatgatcttgagagactcaagaaaatccgtaatcatcgggg 11541483  T
Q  201 tttgaggcactactggcgccttcgtgttcgtggtcagcataccacgactacaggctgactgttggtgtctcaaagaagcgttaag 285  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11541484 tttgaggcacaactggggccttcgtgttcgtggtcagcataccacgactacaggctgactgttggtgtctcaaagaagcgttaag 11541568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1005 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 2427 - 2711
Alignment:
Q  1 gctggtaaattgagtgctgcagagttgagtaatattatgacagtggttgcgaatcctcgtcaattcaagcttccagattggtttttgaacagaaagaaag 100  Q
    ||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  2427 gctggtaaattgagtgctgcagaattggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccaaattggtttttgaacagaaagaaag 2526  T
Q  101 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaagctcagggatgatcttgagagactcaagaaaattcgtaatcaccgggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||    
T  2527 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaaattcagggatgatcttgagagactcaagaaaatccgtaatcaccgggg 2626  T
Q  201 tttgaggcactactggcgccttcgtgttcgtggtcagcataccacgactacaggctgactgttggtgtctcaaagaagcgttaag 285  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2627 tttgaggcactactggggcctttgtgttcgtggtcagcataccacgactacaggctgactgttggtgtctcaaagaagcgttaag 2711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 8e-92; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 41556218 - 41556468
Alignment:
Q  1 gctggtaaattgagtgctgcagagttgagtaatattatgacagtggttgcgaatcctcgtcaattcaagcttccagattggtttttgaacagaaagaaag 100  Q
    |||||| |||| |||||||||||||||  ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  41556218 gctggtgaattaagtgctgcagagttggataatattatgatagtggttgcgaatcctcgtcaattcaaggttccagattggtttttgaacagaaagaagg 41556317  T
Q  101 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaagctcagggatgatcttgagagactcaagaaaattcgtaatcaccgggg 200  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||||||| |||| || |||||||| || ||    
T  41556318 attacaaggatgggaaattctctcaagttgtatccaatcaatttgacatgaagctgagggatgatttggagagactcgagaagatccgtaatcatcgtgg 41556417  T
Q  201 tttgaggcactactggcgccttcgtgttcgtggtcagcataccacgactac 251  Q
     ||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  41556418 attgaggcactactggggccttcgtgttcgtggtcagcataccaagactac 41556468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 44179781 - 44179962
Alignment:
Q  1 gctggtaaattgagtgctgcagagttgagtaatattatgacagtggttgcgaatcctcgtcaattcaagcttccagattggtttttgaacagaaagaaag 100  Q
    |||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |    
T  44179781 gctggtgaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaatttaaggttccagattggtttttgaacagaaagaagg 44179880  T
Q  101 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaagctcagggatgatcttgagagactcaagaa 182  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||| | || |||||| | ||||||||||||||    
T  44179881 attacaaggatgggaaattctctcaggttgtctccaatcaactcgacatgaagttgagagatgatttggagagactcaagaa 44179962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 44206912 - 44207093
Alignment:
Q  1 gctggtaaattgagtgctgcagagttgagtaatattatgacagtggttgcgaatcctcgtcaattcaagcttccagattggtttttgaacagaaagaaag 100  Q
    |||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |    
T  44206912 gctggtgaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaatttaaggttccagattggtttttgaacagaaagaagg 44207011  T
Q  101 attacaaggatggcaaattctctcaagttgtatccaatcaacttgacatgaagctcagggatgatcttgagagactcaagaa 182  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||| | || |||||| | ||||||||||||||    
T  44207012 attacaaggatgggaaattctctcaggttgtctccaatcaactcgacatgaagttgagagatgatttggagagactcaagaa 44207093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 44180824 - 44180889
Alignment:
Q  190 aatcaccggggtttgaggcactactggcgccttcgtgttcgtggtcagcataccacgactacaggc 255  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  44180824 aatcaccggggtttgaggcactactggggccttcgtgttcgtggtcagcataccaagactacaggc 44180889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 44208046 - 44208109
Alignment:
Q  188 gtaatcaccggggtttgaggcactactggcgccttcgtgttcgtggtcagcataccacgactac 251  Q
    ||||||| || |||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  44208046 gtaatcatcgtggtttgaggcactactggggccttcgtgttcgtggtcagcataccaagactac 44208109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 4860519 - 4860380
Alignment:
Q  44 tggttgcgaatcctcgtcaattcaagcttccagattggtttttgaacagaaagaaagattacaaggatggcaaattctctcaagttgtatccaatcaact 143  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||||| ||||| |||||    
T  4860519 tggttgcgaatcctcgtcaattcaaggttccagattggtttttgaataggaagaaggattacaaggatggaaaattttctcaagttgtctccaaccaact 4860420  T
Q  144 tgacatgaagctcagggatgatcttgagagactcaagaaa 183  Q
    |||||||||| | || ||| || | |||||||||||||||    
T  4860419 tgacatgaagttgagagataatttggagagactcaagaaa 4860380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 14927142 - 14927273
Alignment:
Q  34 attatgacagtggttgcgaatcctcgtcaattcaagcttccagattggtttttgaacagaaagaaagattacaaggatggcaaattctctcaagttgtat 133  Q
    |||||||| |||||||| || ||| | ||||||||| | || ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |    
T  14927142 attatgactgtggttgccaaccctaggcaattcaaggtccctgattggtttttgaacagaaagaaggattacaaggatggcaagttttctcaagttgttt 14927241  T
Q  134 ccaatcaacttgacatgaagctcagggatgat 165  Q
    | |||||||| ||||||||| | |||||||||    
T  14927242 caaatcaactggacatgaagttgagggatgat 14927273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 14929190 - 14929251
Alignment:
Q  190 aatcaccggggtttgaggcactactggcgccttcgtgttcgtggtcagcataccacgactac 251  Q
    |||||||| |||||||| || |||||| | |||||||||||||| |||||||||| ||||||    
T  14929190 aatcaccgaggtttgagacattactggggtcttcgtgttcgtggacagcataccaagactac 14929251  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 45048329 - 45048279
Alignment:
Q  201 tttgaggcactactggcgccttcgtgttcgtggtcagcataccacgactac 251  Q
    |||||||||||||||  ||||||||| ||||||||||||||||| ||||||    
T  45048329 tttgaggcactactgtggccttcgtgctcgtggtcagcataccaagactac 45048279  T

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