View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_38 (Length: 301)
Name: NF17649_low_38
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 40581869 - 40582139
Alignment:
| Q |
15 |
tatctagatttcacatggtcagatttgcttgaattcacttaaaaatattgtataccagatgaagctacactcaaatttcaccaactggttgctatcctcc |
114 |
Q |
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| T |
40581869 |
tatctagatttcacatggtcagatttgcttgaattcacttaaaaatattgtataccagatgaagctacactcaaatttcaccaactggttgctatcatcc |
40581968 |
T |
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| Q |
115 |
aaaaaacaaaacctttaatcaacaaactgattctgttaataagacacggggattctgtactctatttcttaaattaaagagagtctattacttcatgtta |
214 |
Q |
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| T |
40581969 |
aaaaaacaaaaactttaatcaacaaactgattctgtaaataacacacggggattctgtactctatttcttaaattaaagagagtctattacttcatgtta |
40582068 |
T |
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| Q |
215 |
tgaacaaaaatatagatgaggaaaatattgagccacaaaaggaagtttcccatattgcaaaatgttgtttc |
285 |
Q |
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| T |
40582069 |
tgaacaaaaatatagatgaggaaaatattgagccactaaaggaagtttcccatattgcaaaatgttgtttc |
40582139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 40555446 - 40555559
Alignment:
| Q |
15 |
tatctagatttcacatggtcagatttgcttgaattcacttaaaaatattgtataccagatgaagctaca--ctcaaatttcaccaactggttgctatcct |
112 |
Q |
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| T |
40555446 |
tatccagattttacatggtcagatttgcttgaattcactcaaaattattacagagcagatgaatccacactctcaaatttcaccaactggttgctatctt |
40555545 |
T |
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| Q |
113 |
ccaaaaaacaaaac |
126 |
Q |
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| T |
40555546 |
ccaaatcacaaaac |
40555559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 40573513 - 40573584
Alignment:
| Q |
202 |
ttacttcatgttatgaacaaaaatatagatgaggaaaatattgagccacaaaaggaagtttcccatattgca |
273 |
Q |
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| T |
40573513 |
ttacttcatattttggacaaaaatatagatgaggcaaatattgagcaactaaaagaggttgcccatattgca |
40573584 |
T |
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