View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_39 (Length: 285)
Name: NF17649_low_39
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 35510382 - 35510139
Alignment:
| Q |
20 |
aagtcttgaatttagagtctaaagatcttgagtttgagccccaataatgcttttgtaggagataaaggtaaatattcttacgagtgttctttaaccctta |
119 |
Q |
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| T |
35510382 |
aagtcttgaatttagagtctaaagatctcgagtttgagccccaataatacttttgcaggagataaaggtaaatattcttacgagtgttctttaaccctaa |
35510283 |
T |
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| Q |
120 |
aagttttcatattttggacttacacactttcgccatcctaaatcttatgtaaagggagttcaatttcaatttcaattactcaactcatctaactttgcta |
219 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |||||| | ||| |
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| T |
35510282 |
aagttttcatattttagacttacacactttcgcgatcctaaatctcatgtaaagggagttcaatttc------aattactcaactcaactaactatacta |
35510189 |
T |
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| Q |
220 |
aaatcattatccaattaaatagtggtaccactcgcattgaaagcactaac |
269 |
Q |
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| T |
35510188 |
aaatcattatccaattaaatagtggtaccacttgcattgaaagcactaac |
35510139 |
T |
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