View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_4 (Length: 564)
Name: NF17649_low_4
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Complemental strand, 6942342 - 6941880
Alignment:
| Q |
19 |
gatctactctttggatagtctatcaagttttcagaatgtatacttaacagtttttaagtaaactttaggggaatggaacaaattacattggggttggaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6942342 |
gatctactctttggatagtctatcaagttttcagaatgtatacttagcagtttataagtaaactttaggggaatggaacaaattacattggggttggaat |
6942243 |
T |
|
| Q |
119 |
tagacggaggtcatgatcgagttttatgatactagtcatgatcttgaacagcgtgaatgcggggaatctctgactacatggaatctaaatgaaactgcaa |
218 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6942242 |
tagacggaggtcatgatcgagttttatgatactggtcatgatcttgaacagcgtgaatgcggggaatctctgactacatggaatctaaatgaaactgcaa |
6942143 |
T |
|
| Q |
219 |
cattaacctagtttccaatggaaagaaagagagaaaacttaatcattttcttatgatagaaaaagagtgttatatagttgtaggttctcaattatatgta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6942142 |
cattaacctagtttccaatggaaagaaagagagaaaacttaatcattttcttatgatagaaaaagagtgttatatagttgtaggttctcaattatatgta |
6942043 |
T |
|
| Q |
319 |
aaggttatttaagcagtgttatactatgtgtaataactgtttaaaaataatacctctaattgatgaataatgnnnnnnnnaatcaactttgttacttttg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6942042 |
aaggttatttaagcagtgttatactatgtgtaataactgtttaaaaataatacctctaattgatgaataatg-tttttttaatcaactttgttacttttg |
6941944 |
T |
|
| Q |
419 |
gaccaagcaggatcagcataagctgaagaaattgtgtttcatctgctactcattctgcctatcc |
482 |
Q |
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| T |
6941943 |
gaccaagcaggatcagcataagctgaagaaattgtgtttcatctgctactcactctgcctatcc |
6941880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 217 - 465
Target Start/End: Complemental strand, 6934404 - 6934157
Alignment:
| Q |
217 |
aacattaacctagtttccaatggaaagaaagagagaaaacttaatcattttcttatgatagaaaaagagtgttatatagttgtaggttctcaattatatg |
316 |
Q |
| |
|
||||| |||||||||| ||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||| |||||||||||||||||| | ||||| || |
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| T |
6934404 |
aacatcaacctagttttcaatggaaaaaaagagagaaaacttaaccattttctgatgatcgaaaaggagagttatatagttgtaggttgttgattatgtg |
6934305 |
T |
|
| Q |
317 |
taaaggttatttaagcagtgttatactatgtgtaataactgtttaaaaataatacctctaattgatgaataatgnnnnnnnnaatcaactttgttacttt |
416 |
Q |
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||| |||||||||||| ||| ||| ||||| ||||||||||||||| || |||||| ||||| ||||| | | |||||||||||||||||| |
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| T |
6934304 |
taatggttatttaagccatgtcatattatgtataataactgtttaaagat-atacctgtaattaatgaacatggttttttttaatcaactttgttacttt |
6934206 |
T |
|
| Q |
417 |
tggaccaagcaggatcagcataagctgaagaaattgtgtttcatctgct |
465 |
Q |
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| ||||| ||||||||| ||||||||||||||| |||||||||| |||| |
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| T |
6934205 |
ttgaccatgcaggatcaccataagctgaagaaactgtgtttcatttgct |
6934157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 6953677 - 6953602
Alignment:
| Q |
244 |
aaagagagaaaacttaatcattttcttatgatagaaaaagagtgttatatagttgtaggttctcaattatatgtaa |
319 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| |||||| ||||| ||||| |
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| T |
6953677 |
aaagagagaaaacttaatcattttttgatgatagaaaaagagagttatatagttgtaagttctcgattatgtgtaa |
6953602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 399 - 465
Target Start/End: Complemental strand, 6920384 - 6920318
Alignment:
| Q |
399 |
aatcaactttgttacttttggaccaagcaggatcagcataagctgaagaaattgtgtttcatctgct |
465 |
Q |
| |
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| T |
6920384 |
aatcaactttgttacttttggaccatgcaggatcaccataagctaaagaaattgtgttttatctgct |
6920318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 399 - 465
Target Start/End: Complemental strand, 6944589 - 6944523
Alignment:
| Q |
399 |
aatcaactttgttacttttggaccaagcaggatcagcataagctgaagaaattgtgtttcatctgct |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| |
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| T |
6944589 |
aatcaactttgttacttttggaccaagcaggatcaccataagctgaagaaacagtttttcatctgct |
6944523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 343 - 465
Target Start/End: Complemental strand, 6953610 - 6953488
Alignment:
| Q |
343 |
tatgtgtaataactgtttaaaaataatacctctaattgatgaataatgnnnnnnnnaatcaactttgttacttttggaccaagcaggatcagcataagct |
442 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||| ||||| | | |||||||||| |||||||| ||||||||||||||| |||||||| |
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| T |
6953610 |
tatgtgtaataactgtttaaaaataataactgtgattaatgaacatggttttttttaatcaacttttttacttttagaccaagcaggatcaccataagct |
6953511 |
T |
|
| Q |
443 |
gaagaaattgtgtttcatctgct |
465 |
Q |
| |
|
|||||||| ||||||||||||| |
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| T |
6953510 |
aaagaaattttgtttcatctgct |
6953488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 183 - 300
Target Start/End: Complemental strand, 6920658 - 6920540
Alignment:
| Q |
183 |
aatctctgactacatggaatctaaatgaaactgcaacattaacctagtttccaatggaaagaa-agagagaaaacttaatcattttcttatgatagaaaa |
281 |
Q |
| |
|
|||||| |||||||||||| | |||||||||| ||| || ||||||||||||||| ||| || | ||| ||||||||||| ||| | | ||||||||| |
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| T |
6920658 |
aatctccgactacatggaacccaaatgaaactacaaaatcgacctagtttccaatgaaaaaaagaaagataaaacttaatcttttcgtcacgatagaaaa |
6920559 |
T |
|
| Q |
282 |
agagtgttatatagttgta |
300 |
Q |
| |
|
|| | |||||||||||||| |
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|
| T |
6920558 |
agcgagttatatagttgta |
6920540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 506 - 548
Target Start/End: Complemental strand, 6941856 - 6941814
Alignment:
| Q |
506 |
attgcatggatattatgatgtttaaggaattttacattgcaca |
548 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
6941856 |
attgcatggatattatgatgtttaaggaattttacattacaca |
6941814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 6953737 - 6953691
Alignment:
| Q |
157 |
tgatcttgaacagcgtgaatgcggggaatctctgactacatggaatc |
203 |
Q |
| |
|
|||||||||||| | |||||||||| |||||| |||||||||||||| |
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|
| T |
6953737 |
tgatcttgaacaacatgaatgcgggaaatctccgactacatggaatc |
6953691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 6947092 - 6947047
Alignment:
| Q |
103 |
acattggggttggaattagacggaggtcatgatcgagttttatgat |
148 |
Q |
| |
|
|||| ||| ||||||||| | ||||||||||||||||||||||||| |
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|
| T |
6947092 |
acatagggtttggaattatagggaggtcatgatcgagttttatgat |
6947047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 6933553 - 6933484
Alignment:
| Q |
246 |
agagagaaaacttaatcattttcttat----gatagaaaaagagtg-ttatatagttgtaggttctcaat |
310 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
6933553 |
agagagaaaacttgatcattttcagatgatagatagaaaaagagagtttatatagttgtaggttctcaat |
6933484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 365
Target Start/End: Complemental strand, 1984923 - 1984785
Alignment:
| Q |
227 |
tagtttccaatggaaagaaagagagaaaacttaatcattttcttatgatagaaaaagagtgttatatagttgtaggttctcaattatatgt----aaagg |
322 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| || || |
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|
| T |
1984923 |
tagtttccaatggaaaga--gagagaaaactaa--catttttttatgatagaaaaagagtgttatatagttgtaggttcttgattatgtgtaatgaatgg |
1984828 |
T |
|
| Q |
323 |
ttatttaagcagtgttatactatgtgtaataactgtttaaaaa |
365 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||| ||||||| |
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|
| T |
1984827 |
ttatttaagccatgtcatattatgtgtaataactgcttaaaaa |
1984785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 14517333 - 14517375
Alignment:
| Q |
403 |
aactttgttacttttggaccaagcaggatcagcataagctgaag |
446 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||| |
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|
| T |
14517333 |
aactttgttacttt-ggaccaagcaggatcaccataagctgaag |
14517375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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