View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_40 (Length: 284)
Name: NF17649_low_40
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 42876434 - 42876164
Alignment:
| Q |
1 |
ttaaagacaatgaattgcattaacatatttccatcttttcgtcnnnnnnncttattttcatcctaaatatatttgttttcattaaatttgtatataacta |
100 |
Q |
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| T |
42876434 |
ttaaagacaatgaattgcattaacatatttccatcttttcgtcaaaaaaacttattttcatcctaaatatatttgttttcattaaatttgtatataacta |
42876335 |
T |
|
| Q |
101 |
ttagagaaaattaccattttaaaaatatcccaagatattattaattgtttcattttaaacatgtt-nnnnnnnncgccagttgtttctccttttgctatc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42876334 |
ttagagaaaattaccattttaaaaatatcccaagatattattaattgtttcattttaaacatgttaaaaaaaaacgccagttgtttctccttttgctatc |
42876235 |
T |
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| Q |
200 |
tccannnnnnncgtatatttacaaaacaatcaaagcactgtctgtgttcttgagaattctgtgtgtattgt |
270 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42876234 |
tccatttttttcgtatatttacaaaacaatcaaagcactgtctgtgttcttgagaattctgtgtgtattgt |
42876164 |
T |
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