View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_41 (Length: 279)
Name: NF17649_low_41
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 41743912 - 41744176
Alignment:
| Q |
1 |
tgttgatagagatgtgttattggacttacatttgtctccatttcatcttcgttttcctagactcaactctatatgcatccatagagacaaactcatcaag |
100 |
Q |
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| T |
41743912 |
tgttgatagagatgtgttactggacttacatttgtcttcatttcatcttcgttttcctagactcgactctatatgcatgtatagagacaaactcatcaag |
41744011 |
T |
|
| Q |
101 |
taatacgcatcttcacatcatcaataattcacatattaatgcaaaactctccctattatgtacaatgtcaagacaaacatattattctcatcgtcatcaa |
200 |
Q |
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| T |
41744012 |
taatacacatcttcacatcatcaataattcacatattaatgcaaaactctccctattatgtacaatgtcaagacaaacatattattctcatcgtcatcaa |
41744111 |
T |
|
| Q |
201 |
agagtaaacattgttattttcatcatcatcataattagacgtcgtcattctcatcatcagtataa |
265 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41744112 |
agagtaaacattgttattttcatcatcatcataattagacgtcgtcattctcatcatcaatataa |
41744176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 24622052 - 24622317
Alignment:
| Q |
8 |
agagatgtgttattggacttacatttgtctccatttcatcttcgttttcctagactcaactctatatgcatccatagagacaaactcatcaagtaatacg |
107 |
Q |
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| T |
24622052 |
agagatatgttactggatttacactcgtcttctcttcatcttctttttcctagactcaactctatatgcatgcatgaagaccgactcatcaagtaataca |
24622151 |
T |
|
| Q |
108 |
catcttcacatcatcaataattcacatattaatg---caaaactctccctattatgtacaatgtcaagacaaacat------attattctcatcgtcatc |
198 |
Q |
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| T |
24622152 |
cattttcacatcatcaacaattcacatattaatgcaacaagagccttcctattatgcataacatcaaggcaaacatatattcatcactctcatcgtcatc |
24622251 |
T |
|
| Q |
199 |
aaagagtaaacattgttattttcatcatcatcataattagacgtcgtcattctcatcatcagtata |
264 |
Q |
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| T |
24622252 |
aaagggtaaacatcatcaatctcatcatcatcataattacacgtcatcattctcatcatcaatata |
24622317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 18785465 - 18785371
Alignment:
| Q |
10 |
agatgtgttattggacttacatttgtctccatttcatcttcgttttcctagactcaactctatatgcatccatagagacaaactcatcaagtaat |
104 |
Q |
| |
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| T |
18785465 |
agatgtgttactggacttacattcgtcttcatttcatcttcattttcctaaactcaactttatatgcatgcatggagacaaactcatcaagtaat |
18785371 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 265
Target Start/End: Complemental strand, 18785348 - 18785223
Alignment:
| Q |
146 |
actctccctattatgtacaatgtcaagacaaacatattatt------ctcatcgtcatcaaagagtaaacattgttattttcatcatcatcataattaga |
239 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||||||| ||| ||||| ||||| ||||||||||||| | ||| ||||| |||||| ||||||| |
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| T |
18785348 |
actctccctattatgcacaacgtcaaaacaaacatatcattatcattctcattgtcattaaagagtaaacatcatcattctcatcttcatcacaattaga |
18785249 |
T |
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| Q |
240 |
cgtcgtcattctcatcatcagtataa |
265 |
Q |
| |
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| || |||||||||| |||| ||||| |
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| T |
18785248 |
catcatcattctcataatcaatataa |
18785223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 22521540 - 22521627
Alignment:
| Q |
91 |
actcatcaagta-atacgcatcttcacatcatcaataattcacatattaatgcaaaactctccctattatgtacaatgtcaagacaaa |
177 |
Q |
| |
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|||||||||||| |||| | ||||||||| ||||| ||||||||||| ||||||| ||||| ||||||||| || | |||||||||| |
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| T |
22521540 |
actcatcaagtatatacacgtcttcacatgatcaacaattcacatatcaatgcaagactcttcctattatgcacgacatcaagacaaa |
22521627 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 34635902 - 34635732
Alignment:
| Q |
8 |
agagatgtgttattggacttacatttgtctccatttcatcttcgtttt--cctagactcaactctatatgcatccatagagacaaactcatcaagtaata |
105 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||||| || |||| ||||||| |||||||||||| || ||| ||||||||||||||||||| || |
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| T |
34635902 |
agagatgtgttactggacttacattcgtcttcatttcatcctcattttttcctagacacaactctatatgtatgcatggagacaaactcatcaagtatta |
34635803 |
T |
|
| Q |
106 |
cgcatcttcacatcatcaataattcaca-tattaatgcaaaactctccctattatgtacaatgtcaagacaaa |
177 |
Q |
| |
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|| | ||| |||||||| |||||||| ||| ||||| |||||| | ||||||||||| | |||||||||| |
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| T |
34635802 |
aacaccatcatatcatcaacaattcacattataaatgc--aactcttcttattatgtacattatcaagacaaa |
34635732 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 19019617 - 19019729
Alignment:
| Q |
66 |
actctatatgcatccatagagacaaactcatcaagta-atacgcatcttcacatcatcaataattcacatattaatgcaaaactctccctattatgtaca |
164 |
Q |
| |
|
||||||||||||| || |||| ||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| ||| | ||||||||| ||| |
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| T |
19019617 |
actctatatgcatgtatgaagactaactcatcaagtatatacacatcttcacatcatcaacaattcacatattaatgcaagactattcctattatgcaca |
19019716 |
T |
|
| Q |
165 |
atgtcaagacaaa |
177 |
Q |
| |
|
| |||||||||| |
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|
| T |
19019717 |
acatcaagacaaa |
19019729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 33499810 - 33499706
Alignment:
| Q |
56 |
cctagactcaactctatatgcatccatagagacaaactcatcaagtaatacgcatcttcacatcatcaataattcacatattaatgcaaaactctcccta |
155 |
Q |
| |
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|||||| |||||||||||||||| ||| |||||| |||| |||||||||| || | ||||||||||| ||||||||||||||||| | |||||||||| |
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| T |
33499810 |
cctagaatcaactctatatgcatgcatggagacatactcgacaagtaatacatatttgcacatcatcaacaattcacatattaatgctagactctcccta |
33499711 |
T |
|
| Q |
156 |
ttatg |
160 |
Q |
| |
|
|||| |
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|
| T |
33499710 |
atatg |
33499706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 43155380 - 43155284
Alignment:
| Q |
44 |
catcttcgttttcctagactcaactctatatgcatccatagagacaaactcatcaagtaatacgcatcttcacatcatcaataattcacatattaatg |
141 |
Q |
| |
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||||||| ||||||||| |||||| ||| |||||| || |||||| ||||| |||||||||| | |||||||||||||| |||||||||||||||| |
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| T |
43155380 |
catcttctttttcctaggctcaaccctaaatgcatg-atggagacagactcaacaagtaatacacgccttcacatcatcaacaattcacatattaatg |
43155284 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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