View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17649_low_44 (Length: 273)

Name: NF17649_low_44
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17649_low_44
NF17649_low_44
[»] chr6 (10 HSPs)
chr6 (5-257)||(2951521-2951773)
chr6 (5-257)||(2926739-2926991)
chr6 (20-253)||(2934182-2934415)
chr6 (20-253)||(3004043-3004276)
chr6 (23-253)||(2997662-2997892)
chr6 (7-252)||(2659252-2659497)
chr6 (20-253)||(2982449-2982688)
chr6 (23-257)||(2964061-2964301)
chr6 (23-122)||(2973727-2973826)
chr6 (160-253)||(2972583-2972676)
[»] scaffold0024 (1 HSPs)
scaffold0024 (20-252)||(35486-35721)
[»] chr7 (1 HSPs)
chr7 (20-252)||(3338765-3338997)
[»] chr3 (2 HSPs)
chr3 (34-131)||(49618100-49618197)
chr3 (158-223)||(49613028-49613093)


Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 5 - 257
Target Start/End: Complemental strand, 2951773 - 2951521
Alignment:
Q  5 ggatgtcgaagaaaattgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttg 104  Q
    ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2951773 ggatgtccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttg 2951674  T
Q  105 aaatcagataagatagattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttcca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2951673 aaatcagataagatagattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttcca 2951574  T
Q  205 tgttttggagctgggggtgaccatggtgaaaggggccaatggaaacgaccttg 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2951573 tgttttggagctgggggtgaccatggtgaaaggggccaatggaaacgaccttg 2951521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 257
Target Start/End: Complemental strand, 2926991 - 2926739
Alignment:
Q  5 ggatgtcgaagaaaattgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttg 104  Q
    ||||||| || ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  2926991 ggatgtccaaaaaagttgaattataaaagcggaattgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcggaataacaacgtttg 2926892  T
Q  105 aaatcagataagatagattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttcca 204  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2926891 aaatcagataagatagattctatgtagccgactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttcca 2926792  T
Q  205 tgttttggagctgggggtgaccatggtgaaaggggccaatggaaacgaccttg 257  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  2926791 tgttttggagctggggttgaccgtggtgaaaggggccaatagaaacgaccttg 2926739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 2934415 - 2934182
Alignment:
Q  20 ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagata 119  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2934415 ttgaattataaaagcggaatctattaaaattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacgtttgaaatcagataagata 2934316  T
Q  120 gattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggg 219  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2934315 gattctatgtagcagactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggg 2934216  T
Q  220 ggtgaccatggtgaaaggggccaatggaaacgac 253  Q
    ||||||| ||||||||||||||||||||||||||    
T  2934215 ggtgaccgtggtgaaaggggccaatggaaacgac 2934182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 3004043 - 3004276
Alignment:
Q  20 ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |    
T  3004043 ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcggaataacaacgtttgaaatcagataagaca 3004142  T
Q  120 gattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggg 219  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3004143 gattctatgtagcagactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgattttccatgttttggagctggg 3004242  T
Q  220 ggtgaccatggtgaaaggggccaatggaaacgac 253  Q
    ||||||| ||||||||||||||||||||||||||    
T  3004243 ggtgaccgtggtgaaaggggccaatggaaacgac 3004276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 2997662 - 2997892
Alignment:
Q  23 aattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagat 122  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||     
T  2997662 aattataaaaccggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcggaataacaacgtttgaaattagataagatagaa 2997761  T
Q  123 tctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggt 222  Q
    |||| ||||   |||||||| |||||||||||||  |||| |||||||||| | ||||||| |||||||||||||  |||||||||||||||||| || |    
T  2997762 tctacgtagcatactaagtcatttaaacatgcctcagttcgttggagaaaagctttgaagtgaatgagtttctgaggttccatgttttggagctgtggat 2997861  T
Q  223 gaccatggtgaaaggggccaatggaaacgac 253  Q
    |||||||||||||||||||||||||||||||    
T  2997862 gaccatggtgaaaggggccaatggaaacgac 2997892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 2659252 - 2659497
Alignment:
Q  7 atgtcgaagaaaattgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaa 106  Q
    ||||| || ||| |||||||||||||  |||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||    
T  2659252 atgtccaaaaaagttgaattataaaacaggaatcgattaagattaacttaacaagttcattatcagaaaatggtagggtttcggaataacaacttttgaa 2659351  T
Q  107 atcagataagatagattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatg 206  Q
    |  ||||||| |||||| ||||| |   || |||  || ||||||||| ||||||| |||||||||| | || |||||||||||||| |||| |||||||    
T  2659352 acgagataagttagattttatgttgctgaccaaggtgtctaaacatgcattggttcgttggagaaaagctttcaagtaaatgagtttgtgacgttccatg 2659451  T
Q  207 ttttggagctgggggtgaccatggtgaaaggggccaatggaaacga 252  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  2659452 ttttggagctgggggtgatcatggtgaaaggggccaatggaaacga 2659497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 2982688 - 2982449
Alignment:
Q  20 ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||   |||||||||||||||||||    
T  2982688 ttgaattataaaagcggaatcgattaagattaacttaacaagttcattatgagaaaatggtaggggttcagaataacagtgtttgaaatcagataagata 2982589  T
Q  120 gattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgg- 218  Q
    || |||| ||||   || |||||||||||| |||||| ||||| ||| |||||| | ||||||| |||||| ||||||| ||||||||||||||| |||     
T  2982588 gaatctacgtagcagaccaagtcgtttaaagatgcctcggttcgttgaagaaaagctttgaagtgaatgagcttctgacgttccatgttttggagatgga 2982489  T
Q  219 -----gggtgaccatggtgaaaggggccaatggaaacgac 253  Q
          ||||||| ||||||||||||||||||||||||||    
T  2982488 ggcctaggtgaccgtggtgaaaggggccaatggaaacgac 2982449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 257
Target Start/End: Complemental strand, 2964301 - 2964061
Alignment:
Q  23 aattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagat 122  Q
    |||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||      
T  2964301 aattataaaaccagaatcgattaagattaacttgacaagttcatcatgagaaaatggtagagtttcggaataacagcatttgaaatcagataagatagca 2964202  T
Q  123 tctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttgga------gct 216  Q
    |||||||||   || |  |||||||||  || || ||||| |||||||||||| ||||||||||||||||| || | ||||||||||||||      | |    
T  2964201 tctatgtagtagaccatttcgtttaaagttgtctcggttcgttggagaaaatctttgaagtaaatgagtttttgtcgttccatgttttggatctgggggt 2964102  T
Q  217 gggggtgaccatggtgaaaggggccaatggaaacgaccttg 257  Q
    |||||||||| |||||||||||||| |||||||||| ||||    
T  2964101 gggggtgaccgtggtgaaaggggccgatggaaacgaacttg 2964061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 2973826 - 2973727
Alignment:
Q  23 aattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagat 122  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||  ||||||||||| ||||||||  |||||||| | ||||||||||||||||||||||    
T  2973826 aattataaaaccggaatccattaaaattaacttaacaagttcaatatgagaaaatgatagggttttggaataacagcctttgaaatcagataagatagat 2973727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 2972676 - 2972583
Alignment:
Q  160 ttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtgaccatggtgaaaggggccaatggaaacgac 253  Q
    |||||| ||||||| | ||||||||||||||||| |||| ||||||||||||||||||||  ||| | ||||||||||||||||||||||||||    
T  2972676 ttcttttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggtttgaacgtggtgaaaggggccaatggaaacgac 2972583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 35486 - 35721
Alignment:
Q  20 ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcat---gagaaaatggtagggtttcagaataacaacttttgaaatcagataag 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||   ||| ||||| ||||||||| |||||||||| ||||||||||||||||    
T  35486 ttgaattataaaaccggaatcgattaagattaacttaacaagttcttcatcctgaggaaatgatagggtttccgaataacaacatttgaaatcagataag 35585  T
Q  117 atagattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagct 216  Q
    ||||| | ||||| |   |  |||  | ||||| |||| ||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||| |||||    
T  35586 atagaatatatgtcgctgatcaagatgcttaaagatgcattggttcgttggagaaaatctttgaagtaaatgagtttgtgacgttccatgtttttgagct 35685  T
Q  217 gggggtgaccatggtgaaaggggccaatggaaacga 252  Q
    |||||||||| |||||||||||||||||||||||||    
T  35686 gggggtgaccgtggtgaaaggggccaatggaaacga 35721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 3338997 - 3338765
Alignment:
Q  20 ttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagata 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| ||||  ||| |||||||||| ||||||||||| |||||||    
T  3338997 ttgaattataaaaccggaatcgattaagattaacttaacaagtttatcatcagaaaatgttaggaattccgaataacaacgtttgaaatcaggtaagata 3338898  T
Q  120 gattctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggg 219  Q
    || |||| |||||  || ||||| ||||||||||||| ||||| |||||||||| | ||||||||||||||||| |||| ||||||||||| |||  |||    
T  3338897 gactctacgtagaagaccaagtcttttaaacatgcctcggttcgttggagaaaagctttgaagtaaatgagtttgtgacgttccatgttttagagtcggg 3338798  T
Q  220 ggtgaccatggtgaaaggggccaatggaaacga 252  Q
      | ||| |||||||||||||||||||||||||    
T  3338797 ttttaccgtggtgaaaggggccaatggaaacga 3338765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 49618197 - 49618100
Alignment:
Q  34 cggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagattctatgtag 131  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||| |||||||||  |||||| |    ||||||| ||||||||| || |||||||||    
T  49618197 cggaatcaattaagattaacttaacaaattcatcatgagtaaattgtagggttttggaataagagtgattgaaatgagataagatggaatctatgtag 49618100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 49613093 - 49613028
Alignment:
Q  158 ggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtg 223  Q
    ||||| |||||||||| | ||||||||||||||||| || |  |||||||||||||| ||| ||||    
T  49613093 ggttcgttggagaaaagctttgaagtaaatgagtttgtggcgctccatgttttggaggtggtggtg 49613028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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