View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_45 (Length: 270)
Name: NF17649_low_45
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_45 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 34775561 - 34775805
Alignment:
| Q |
14 |
cataacacatcaatcacataaacaaagttcacccccaaaacaaacagcaaaaa-agagaatagaaatggctttcactaccaacggttctgaagaaagtga |
112 |
Q |
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| T |
34775561 |
cataacacatcaatcacataaacaaagttcacccccaaaacaaacagcaaaaagagagaatagaaatggctttcagtaccaacggttctgaagaaagtga |
34775660 |
T |
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| Q |
113 |
actgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggctctcaaatcagccatggaattaggcatagctgatgcaatt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34775661 |
actgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggctctcaaatcagccatggaactaggcatagctgatgcaatt |
34775760 |
T |
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| Q |
213 |
cacaaccatggaaaaccaatgactctttctgaactagcctcatct |
257 |
Q |
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| T |
34775761 |
cacaaccatggaaaaccaatgactctttctgaactagcctcatct |
34775805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 73 - 257
Target Start/End: Original strand, 34783842 - 34784026
Alignment:
| Q |
73 |
tagaaatggctttcactaccaacggttctgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggc |
172 |
Q |
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| T |
34783842 |
tagaaatggctttcactaccaactgttctgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggc |
34783941 |
T |
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| Q |
173 |
tctcaaatcagccatggaattaggcatagctgatgcaattcacaaccatggaaaaccaatgactctttctgaactagcctcatct |
257 |
Q |
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| T |
34783942 |
actcaaatcagccatggaactaggcatagctgatgcaatccataaccatggaaaaccaatgactctttctgaattagcctcatct |
34784026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 101 - 257
Target Start/End: Complemental strand, 11445801 - 11445645
Alignment:
| Q |
101 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggctctcaaatcagccatggaattaggcata |
200 |
Q |
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|||||||||| | || |||||||||||||||||| ||||||||||| |||||| |||| | | ||||||||| |||||||| || ||||| |||||||| |
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| T |
11445801 |
tgaagaaagtcagctatatcatgctcaaatccatctgtacaaacatatatacagctttataaattccatggcactcaaatctgctgtggaactaggcata |
11445702 |
T |
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| Q |
201 |
gctgatgcaattcacaaccatggaaaaccaatgactctttctgaactagcctcatct |
257 |
Q |
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| T |
11445701 |
gctgatgcaatccacaaccatggaaaaccaatgactcttactgaattagcttcatct |
11445645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 101 - 257
Target Start/End: Original strand, 11507058 - 11507214
Alignment:
| Q |
101 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggctctcaaatcagccatggaattaggcata |
200 |
Q |
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| T |
11507058 |
tgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatatacggctttataaattccatggcactcaaatcagccgtggaactaggcata |
11507157 |
T |
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| Q |
201 |
gctgatgcaattcacaaccatggaaaaccaatgactctttctgaactagcctcatct |
257 |
Q |
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| T |
11507158 |
gcagatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatct |
11507214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 117 - 257
Target Start/End: Original strand, 11547305 - 11547445
Alignment:
| Q |
117 |
tatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggctctcaaatcagccatggaattaggcatagctgatgcaattcaca |
216 |
Q |
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| T |
11547305 |
tatcatgctcaaatccatctgtacaaacatatatacagctttataaattccatggcactcaaatctgctgtggaactaggcatagctgatgcaatccaca |
11547404 |
T |
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| Q |
217 |
accatggaaaaccaatgactctttctgaactagcctcatct |
257 |
Q |
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| T |
11547405 |
accatggaaaaccaatgactcttactgaattagcttcatct |
11547445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 101 - 257
Target Start/End: Complemental strand, 11468773 - 11468617
Alignment:
| Q |
101 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggctctcaaatcagccatggaattaggcata |
200 |
Q |
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| T |
11468773 |
tgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactcaaatctgctgtggaactaggaata |
11468674 |
T |
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| Q |
201 |
gctgatgcaattcacaaccatggaaaaccaatgactctttctgaactagcctcatct |
257 |
Q |
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| T |
11468673 |
gtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct |
11468617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 101 - 257
Target Start/End: Original strand, 11522688 - 11522844
Alignment:
| Q |
101 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggctctcaaatcagccatggaattaggcata |
200 |
Q |
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| T |
11522688 |
tgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactcaaatctgctgtggaactaggaata |
11522787 |
T |
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| Q |
201 |
gctgatgcaattcacaaccatggaaaaccaatgactctttctgaactagcctcatct |
257 |
Q |
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| T |
11522788 |
gtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct |
11522844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 101 - 257
Target Start/End: Original strand, 1715 - 1871
Alignment:
| Q |
101 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggctctcaaatcagccatggaattaggcata |
200 |
Q |
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|||||||| | |||||||||| |||||||||||| ||||||||||| ||||| |||| | | ||||||||| |||||||||||| ||||| |||||||| |
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| T |
1715 |
tgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatatacggctttataaattccatggcactcaaatcagccgtggaactaggcata |
1814 |
T |
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| Q |
201 |
gctgatgcaattcacaaccatggaaaaccaatgactctttctgaactagcctcatct |
257 |
Q |
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|| |||||||| || |||||||||||||||||||||||| ||||| |||| |||||| |
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| T |
1815 |
gcagatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatct |
1871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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