View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_47 (Length: 267)
Name: NF17649_low_47
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 4885058 - 4884860
Alignment:
| Q |
16 |
agaagtaacggtaacagtaacagtaacaacaacatcgagaacagtgctacgttggttgtgtcttctgatcagtacttgactgagattctgtctgagaagg |
115 |
Q |
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| T |
4885058 |
agaagtaacggtaacagtaacagtaacaacaacatcgagaacagtgctacgttggttgtttcttctgatcagtacttgactgagattctgtctgagaagg |
4884959 |
T |
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| Q |
116 |
tttgtagtcagagagatagaagaagaggacgtgttgctgtgtggagacctcatttggagagtatttctgagtcaccaacaaatcatctataacggttga |
214 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4884958 |
tttgtagtcagagagacagaagaagaggacgtgttgctgtgtggagacctcatttggagagtatttctgagtcaccaacaaatcatctataacggttga |
4884860 |
T |
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