View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17649_low_5 (Length: 558)
Name: NF17649_low_5
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 148; Significance: 8e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 182 - 420
Target Start/End: Original strand, 1744486 - 1744724
Alignment:
| Q |
182 |
gtgtcacgtttaattttcaatgtagtgtttcttccaattatacccgataattaatattatgtgcacgaccaagttaatatattcgacttcagatttagga |
281 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||| |||| |||||||||| || ||||||| |||||| |||||| ||||||| |
|
|
| T |
1744486 |
gtgtcacgtttaattttcaatgtggtgtttcttccaattatacgcgataactaatcttatgtgcaccactaagttaa-atattccacttcacatttaggt |
1744584 |
T |
|
| Q |
282 |
attagtgttaatagtgaaaatgagaacgtaaaatagtttacttgcataacaagtaatgtactggtagtgtaactaacttg-agttaattggttagacagt |
380 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
1744585 |
attagtgttaatagtgaaaattagaaggtaaaatagtttacttgcataacaagtaatgtactagtagtgtaactaacttgcagtgaattggttagacagt |
1744684 |
T |
|
| Q |
381 |
tagttagattgataactgaatctagtttgcgataatatag |
420 |
Q |
| |
|
| |||||| ||| |||| |||||||||||| || |||||| |
|
|
| T |
1744685 |
ttgttagaatgacaactaaatctagtttgcaatcatatag |
1744724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 1744322 - 1744379
Alignment:
| Q |
50 |
acaaagtaatttcaagaaggaaaaacacatttggaagtatttttattcattttaatga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1744322 |
acaaagtaatttcaagaaggaaaaacacatttggaagtatttttattcattttaatga |
1744379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 1744415 - 1744464
Alignment:
| Q |
114 |
tatttaaaaataatattttatctcaaaatgagggttacttgactctaaac |
163 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||| ||||||| |
|
|
| T |
1744415 |
tatttaaaaataatatttaatctcaaaacgagggttacttgattctaaac |
1744464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University