View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17649_low_50 (Length: 265)

Name: NF17649_low_50
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17649_low_50
NF17649_low_50
[»] chr8 (6 HSPs)
chr8 (11-265)||(28993050-28993304)
chr8 (189-257)||(13396631-13396699)
chr8 (189-240)||(8300046-8300097)
chr8 (189-257)||(41665198-41665266)
chr8 (189-240)||(7924629-7924680)
chr8 (189-257)||(32266805-32266873)
[»] chr1 (11 HSPs)
chr1 (81-259)||(31873763-31873946)
chr1 (12-245)||(3073819-3074049)
chr1 (187-254)||(21405079-21405146)
chr1 (169-254)||(22191613-22191698)
chr1 (207-257)||(43944303-43944353)
chr1 (189-240)||(35541292-35541343)
chr1 (198-263)||(6458253-6458318)
chr1 (189-257)||(2491455-2491523)
chr1 (189-240)||(6050846-6050897)
chr1 (189-240)||(11908951-11909002)
chr1 (70-114)||(22191758-22191802)
[»] chr6 (5 HSPs)
chr6 (33-254)||(29055602-29055828)
chr6 (189-254)||(21168442-21168507)
chr6 (188-257)||(33185677-33185746)
chr6 (189-257)||(24767258-24767326)
chr6 (188-253)||(28576282-28576347)
[»] chr7 (8 HSPs)
chr7 (187-259)||(17055770-17055842)
chr7 (33-259)||(22819544-22819775)
chr7 (189-257)||(11277081-11277149)
chr7 (189-240)||(4937974-4938025)
chr7 (188-229)||(5318392-5318433)
chr7 (204-257)||(47877241-47877294)
chr7 (183-251)||(17504392-17504460)
chr7 (183-251)||(17548754-17548822)
[»] chr3 (7 HSPs)
chr3 (191-259)||(31547616-31547684)
chr3 (187-259)||(44888145-44888217)
chr3 (189-257)||(34332644-34332712)
chr3 (189-254)||(10323403-10323468)
chr3 (189-240)||(2364520-2364571)
chr3 (189-240)||(7313019-7313070)
chr3 (183-251)||(14854139-14854207)
[»] chr5 (4 HSPs)
chr5 (189-257)||(42928374-42928442)
chr5 (187-257)||(14852358-14852428)
chr5 (189-240)||(30732160-30732211)
chr5 (189-240)||(42513963-42514014)
[»] chr4 (7 HSPs)
chr4 (166-245)||(48805263-48805342)
chr4 (189-254)||(15740464-15740529)
chr4 (189-257)||(19755510-19755578)
chr4 (189-257)||(19784228-19784296)
chr4 (189-240)||(23642437-23642488)
chr4 (189-254)||(47419047-47419112)
chr4 (34-114)||(9777464-9777544)
[»] scaffold0034 (1 HSPs)
scaffold0034 (189-240)||(105689-105740)
[»] chr2 (3 HSPs)
chr2 (188-249)||(33276200-33276261)
chr2 (76-120)||(4222312-4222356)
chr2 (189-257)||(41207259-41207327)
[»] scaffold0472 (1 HSPs)
scaffold0472 (189-257)||(3495-3563)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 28993304 - 28993050
Alignment:
Q  11 cagagaccttcaaaggaacttttgtttgtgccaaattaaatatgataccacatttgttgtctgaactggttgactggtgagcatatggtaaacaccacta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28993304 cagagaccttcaaaggaacttttgtttgtgccaaattaaatatgatatcacatttgttgtctgaactggttgactggtgagcatatggtaaacaccacta 28993205  T
Q  111 actgtataacattcgacggagcctccacacccatcgatctgtagaagttttctttaaagaaatgttagatattaacatcctacacttccctaacaactcc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28993204 actgtataacattcgacggagcctccacacccatcgatctgtagaagttttctttaaagaaatgttagatattaacatcctacacttccctaacaactcc 28993105  T
Q  211 tcctcccaagtccacaaccgccgacgccactgccaagcctccccacctttctcac 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28993104 tcctcccaagtccacaaccgccgacgccactgccaagcctccccacctttctcac 28993050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 13396631 - 13396699
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| ||||||| || | |||||||||||    
T  13396631 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccacc 13396699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 8300046 - 8300097
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccac 240  Q
    |||||||| | ||| ||||||||||||||||| |||||||||||||||||||    
T  8300046 cctacactcctctaccaactcctcctcccaagcccacaaccgccgacgccac 8300097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 41665266 - 41665198
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| ||||||| || |  ||||||||||    
T  41665266 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacacctccccacc 41665198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 7924629 - 7924680
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccac 240  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| |||||||    
T  7924629 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 7924680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 32266805 - 32266873
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    |||||||| | ||| ||||||||||||||| | |||||||| || ||||||| || | |||||||||||    
T  32266805 cctacactcctctaccaactcctcctcccaggcccacaacctcctacgccaccgcaacgcctccccacc 32266873  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 259
Target Start/End: Complemental strand, 31873946 - 31873763
Alignment:
Q  81 tgactggtgagcatatggtaaacaccactaactgtataac-attcgacgga----gcctccacacccatcgatctgtagaagttttctttaaagaaatgt 175  Q
    |||||||| ||||  ||||||||||| |||||||  |||| | ||||||||    ||||||| |||||  ||||||||||| ||| ||  ||||||||||    
T  31873946 tgactggtaagcaattggtaaacacctctaactgagtaaccactcgacggatcaagcctccaaacccactgatctgtagaattttgctgcaaagaaatgt 31873847  T
Q  176 tagatattaacatcctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacctt 259  Q
     ||||| ||| |||||||||| |||||||||||| |||||||||  ||||||||||   |||||||| ||||||||||| ||||    
T  31873846 cagatagtaaaatcctacactgccctaacaactcatcctcccaaacccacaaccgcttgcgccactgtcaagcctccccgcctt 31873763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 3073819 - 3074049
Alignment:
Q  12 agagaccttcaaaggaacttttgtttgtgccaaattaaatatgataccacatttgttgtctgaactggttgactggtgagcatatggtaaacaccactaa 111  Q
    |||||||||||| ||||| |  ||||||||||||||||||   |||  || | || |||||| || ||||||||||||||||| |||||||||||  |||    
T  3073819 agagaccttcaagggaacct--gtttgtgccaaattaaatccaataaaacttctgatgtctggaccggttgactggtgagcatttggtaaacaccgttaa 3073916  T
Q  112 ctgtataaca-ttcgacggagc----ctccacacccatcgatctgtagaagttttctttaaagaaatgttagatattaacatcctacacttccctaacaa 206  Q
    |||  ||||  ||||||||| |    ||||||||||| |||||||||      | ||  || | ||||| ||| | ||| |||||||||| |||||||||    
T  3073917 ctgagtaaccgttcgacggatcaagtctccacacccaccgatctgta------tgctgcaaggtaatgtcagacagtaaaatcctacactcccctaacaa 3074010  T
Q  207 ctcctcctcccaagtccacaaccgccgacgccactgcca 245  Q
    |||||||||||| | ||||||||||| |||||| |||||    
T  3074011 ctcctcctcccaggcccacaaccgcctacgccattgcca 3074049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 21405079 - 21405146
Alignment:
Q  187 atcctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctcccc 254  Q
    |||||||||| |||||||||||||||||| || | ||||||||||| |||||||||||| ||||||||    
T  21405079 atcctacactcccctaacaactcctcctctcatgcccacaaccgcctacgccactgccacgcctcccc 21405146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 22191698 - 22191613
Alignment:
Q  169 gaaatgttagatattaacatcctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctcccc 254  Q
    |||| |||||| | ||| |||||||||| ||||| ||||||||||||||| | ||||||||||| |||||||||||| ||| ||||    
T  22191698 gaaacgttagacaataaaatcctacactcccctaccaactcctcctcccatgcccacaaccgcctacgccactgccacgccacccc 22191613  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 43944353 - 43944303
Alignment:
Q  207 ctcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  43944353 ctcctcctcccaatcccacaaccgcctacgccactgccaagcctccccacc 43944303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 35541292 - 35541343
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccac 240  Q
    |||||||| | ||| ||||||||||||||||| |||||||||||||||||||    
T  35541292 cctacactcctctaccaactcctcctcccaagcccacaaccgccgacgccac 35541343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 6458318 - 6458253
Alignment:
Q  198 ccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacctttctc 263  Q
    |||||||| ||||| |||||||||||||||||| |||||||| ||||| |||  ||| ||||||||    
T  6458318 ccctaacagctccttctcccaagtccacaaccgacgacgccattgccaggccatccctcctttctc 6458253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 2491455 - 2491523
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    |||||||| | ||| |||||| |||||||||| |||||| || |||||||||||||| ||| |||||||    
T  2491455 cctacactcctctaccaactcttcctcccaagcccacaaacgacgacgccactgccacgcccccccacc 2491523  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 6050846 - 6050897
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccac 240  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| |||||||    
T  6050846 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 6050897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 11909002 - 11908951
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccac 240  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| |||||||    
T  11909002 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 11908951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 22191802 - 22191758
Alignment:
Q  70 tctgaactggttgactggtgagcatatggtaaacaccactaactg 114  Q
    ||||||| ||||||||||| ||||| ||||||||||| |||||||    
T  22191802 tctgaaccggttgactggtaagcatctggtaaacaccgctaactg 22191758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 29055602 - 29055828
Alignment:
Q  33 tgtttgtgccaaattaaatatgataccacatttgttgtctgaactggttgactggtgagcatatggtaaacaccactaactgtataaca-ttcgacggag 131  Q
    |||||||||||||||||||  ||||  || |  | |||||| || ||||||| ||||||||  ||||||||||| |||||||  ||||  |||||||||     
T  29055602 tgtttgtgccaaattaaatcggatagaacttccgatgtctggaccggttgaccggtgagcaattggtaaacaccgctaactgagtaaccgttcgacggat 29055701  T
Q  132 c----ctccacacccatcgatctgtagaagttttctttaaagaaatgttagatattaacatcctacacttccctaacaactcctcctcccaagtccacaa 227  Q
    |    ||||||||||| |||||||||||| | | ||  || | ||||||||| | ||| |||||||||| ||||| ||||||||||||| |   ||||||    
T  29055702 caagtctccacacccaccgatctgtagaattatgctgcaaggtaatgttagacagtaaaatcctacactcccctaccaactcctcctcctagacccacaa 29055801  T
Q  228 ccgccgacgccactgccaagcctcccc 254  Q
    ||||| |||||| ||||| ||||||||    
T  29055802 ccgcctacgccattgccacgcctcccc 29055828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 21168442 - 21168507
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctcccc 254  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| ||||||| || | ||||||||    
T  21168442 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctcccc 21168507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 33185677 - 33185746
Alignment:
Q  188 tcctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    ||||||||| | ||| |||||| |||||||| |||||||| || ||||| |||||||| |||||||||||    
T  33185677 tcctacactcctctaccaactcttcctcccatgtccacaaacggcgacgtcactgccacgcctccccacc 33185746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 24767326 - 24767258
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    |||||||| | ||| |||||| |||||||||| ||||||||| ||||||||| || | |||||||||||    
T  24767326 cctacactcctctaccaactcttcctcccaagcccacaaccgtcgacgccaccgcaacgcctccccacc 24767258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 28576347 - 28576282
Alignment:
Q  188 tcctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccc 253  Q
    ||||||||| |||||||||||||||||| || | ||||| ||| || | |||||||||||| ||||    
T  28576347 tcctacactcccctaacaactcctcctctcacgcccacacccgacgccaccactgccaagcatccc 28576282  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 17055770 - 17055842
Alignment:
Q  187 atcctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacctt 259  Q
    |||||||||| |||||||||||||||||| || | ||||||||||| |||||||||||| |||||||| ||||    
T  17055770 atcctacactcccctaacaactcctcctctcatgcccacaaccgcctacgccactgccacgcctccccccctt 17055842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 259
Target Start/End: Complemental strand, 22819775 - 22819544
Alignment:
Q  33 tgtttgtgccaaattaaatatgataccacatttgttgtctgaactggttgactggtgagcatatggtaaacaccactaactgtataac-attcgacggag 131  Q
    ||||| |||||||||||||  ||||  |||| || ||  || || |||||||||||||||||  |||| ||||| |||||||  |||| ||||||||||     
T  22819775 tgtttatgccaaattaaatccgatagaacatctgatgcttggaccggttgactggtgagcattcggtacacaccgctaactgagtaaccattcgacggat 22819676  T
Q  132 c----ctccacacccatcgatctgtagaagttttctttaaagaaatgttagatattaacatcctacacttccctaacaactcctcctcccaagtccacaa 227  Q
    |    ||||||  ||| ||||| |||||| | | ||  ||  |||||| ||| | ||| |||||||||| ||||||||||||||||||||| | ||||||    
T  22819675 caagtctccacgtccaacgatcagtagaattatgctgcaagaaaatgtcagacaataaaatcctacactcccctaacaactcctcctcccaggcccacaa 22819576  T
Q  228 ccgccgacgccactgccaagcctccccacctt 259  Q
    || || |||||| ||||| |||||||| ||||    
T  22819575 cctcctacgccattgccacgcctccccccctt 22819544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 11277149 - 11277081
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| ||||||| || | |||||||||||    
T  11277149 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccacc 11277081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 4938025 - 4937974
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccac 240  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| |||||||    
T  4938025 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 4937974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 5318392 - 5318433
Alignment:
Q  188 tcctacacttccctaacaactcctcctcccaagtccacaacc 229  Q
    ||||||||| |||||||||||||||||| || ||||||||||    
T  5318392 tcctacactcccctaacaactcctcctcacacgtccacaacc 5318433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 47877241 - 47877294
Alignment:
Q  204 caactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    |||||| |||||||||| ||||||||||| ||||||| || | |||||||||||    
T  47877241 caactcttcctcccaagcccacaaccgcctacgccaccgcaacgcctccccacc 47877294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 17504460 - 17504392
Alignment:
Q  183 taacatcctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctc 251  Q
    |||||||||||||| | |||| |  |||||||||||   |||||| |||| ||||||||||||||||||    
T  17504460 taacatcctacactcctctaaaagatcctcctcccacacccacaaacgcctacgccactgccaagcctc 17504392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 17548754 - 17548822
Alignment:
Q  183 taacatcctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctc 251  Q
    |||||||||||||| | |||| |  |||||||||||   |||||| |||| ||||||||||||||||||    
T  17548754 taacatcctacactcctctaaaagatcctcctcccacacccacaaacgcctacgccactgccaagcctc 17548822  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 31547616 - 31547684
Alignment:
Q  191 tacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacctt 259  Q
    |||||| ||||||||||||||||||||| | ||||||||||| |||||||||||| |||||||| ||||    
T  31547616 tacactcccctaacaactcctcctcccatgcccacaaccgcctacgccactgccacgcctccccccctt 31547684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 44888145 - 44888217
Alignment:
Q  187 atcctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacctt 259  Q
    |||||||||| ||||||||| ||||||||||| | ||||||||||| |||||||||||| |||||||| ||||    
T  44888145 atcctacactcccctaacaattcctcctcccatgcccacaaccgcctacgccactgccacgcctccccccctt 44888217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 34332712 - 34332644
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| ||||||| || | |||||||||||    
T  34332712 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccacc 34332644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 10323468 - 10323403
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctcccc 254  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| ||||||| || | ||||||||    
T  10323468 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctcccc 10323403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 2364520 - 2364571
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccac 240  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| |||||||    
T  2364520 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 2364571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 7313019 - 7313070
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccac 240  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| |||||||    
T  7313019 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 7313070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 14854139 - 14854207
Alignment:
Q  183 taacatcctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctc 251  Q
    |||||| ||||||| | |||| |  |||||||||||   ||||||||||| ||||||||||||||||||    
T  14854139 taacattctacactcctctaaaagatcctcctcccacacccacaaccgcctacgccactgccaagcctc 14854207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 42928374 - 42928442
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    |||||||| | ||| |||||| |||||||||| |||||||||||||||||||||| | |||||||||||    
T  42928374 cctacactcctctaccaactcttcctcccaagcccacaaccgccgacgccactgcaacgcctccccacc 42928442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 14852428 - 14852358
Alignment:
Q  187 atcctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    |||||||||| ||||||||  |||||||||| |  ||||||||| || ||||||||||||||| |||||||    
T  14852428 atcctacactcccctaacagttcctcctccccaacccacaaccggcggcgccactgccaagccgccccacc 14852358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 30732211 - 30732160
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccac 240  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| |||||||    
T  30732211 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 30732160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 42513963 - 42514014
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccac 240  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| |||||||    
T  42513963 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 42514014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 48805263 - 48805342
Alignment:
Q  166 aaagaaatgttagatattaacatcctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgcca 245  Q
    |||||||||| | ||| ||| |||||||||| ||||||||||| ||||| ||||| ||||||| |||| ||||| |||||    
T  48805263 aaagaaatgtcaaataataaaatcctacactcccctaacaacttctccttccaagcccacaactgccggcgccattgcca 48805342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 15740464 - 15740529
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctcccc 254  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| | |||||||| | ||||||||    
T  15740464 cctacactcctctaccaactcctcctcccaagcccacaaccgcctatgccactgcaacgcctcccc 15740529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 19755510 - 19755578
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    |||||||| | ||| ||||||||||||| ||| ||||||||||| ||||||| || | |||||||||||    
T  19755510 cctacactcctctaccaactcctcctcctaagcccacaaccgcctacgccaccgcaacgcctccccacc 19755578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 19784296 - 19784228
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    |||||||| | ||| ||||||||||||| ||| ||||||||||| ||||||| || | |||||||||||    
T  19784296 cctacactcctctaccaactcctcctcctaagcccacaaccgcctacgccaccgcaacgcctccccacc 19784228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 23642488 - 23642437
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccac 240  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| |||||||    
T  23642488 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 23642437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 47419047 - 47419112
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctcccc 254  Q
    |||||||| | ||| || |||||||||||||| ||||||||||| ||||||| || | ||||||||    
T  47419047 cctacactcctctaccacctcctcctcccaagcccacaaccgcctacgccaccgcaacgcctcccc 47419112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 9777464 - 9777544
Alignment:
Q  34 gtttgtgccaaattaaatatgataccacatttgttgtctgaactggttgactggtgagcatatggtaaacaccactaactg 114  Q
    |||||||| |||||||||  ||||| || | || |||||| || |||||| |||| ||||| ||||||||||| |||||||    
T  9777464 gtttgtgctaaattaaattcgatacaacttctgatgtctggaccggttgaatggtaagcatttggtaaacaccgctaactg 9777544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 105740 - 105689
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccac 240  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||| |||||||    
T  105740 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 105689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 33276261 - 33276200
Alignment:
Q  188 tcctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcc 249  Q
    ||||||||| |  |||||| ||||||||||| | | ||||||| ||||||||||||||||||    
T  33276261 tcctacactcctttaacaattcctcctcccatgcctacaaccgacgacgccactgccaagcc 33276200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 4222356 - 4222312
Alignment:
Q  76 ctggttgactggtgagcatatggtaaacaccactaactgtataac 120  Q
    |||||||||||||||| | || ||||||||||||||| |||||||    
T  4222356 ctggttgactggtgagaaaatagtaaacaccactaacagtataac 4222312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 41207259 - 41207327
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    |||||||| | ||| |||||| |||||||| | ||||||||| |||||||| ||| | |||||||||||    
T  41207259 cctacactcctctaccaactcttcctcccatgcccacaaccgacgacgccattgcaacgcctccccacc 41207327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 3495 - 3563
Alignment:
Q  189 cctacacttccctaacaactcctcctcccaagtccacaaccgccgacgccactgccaagcctccccacc 257  Q
    |||||||| | ||| ||||||||||||||| | |||||||| || ||||||| || | |||||||||||    
T  3495 cctacactcctctaccaactcctcctcccaggcccacaacctcctacgccaccgcaacgcctccccacc 3563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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