View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_51 (Length: 256)
Name: NF17649_low_51
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 43621070 - 43621264
Alignment:
| Q |
15 |
caaaggatactacattgaaccaacaattttctccaatataaaggtgaataacaagtccacaatcaattttt-tatgttaggcataattaataaccattgc |
113 |
Q |
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| T |
43621070 |
caaaggatactatattgaaccaacaattttctccaatataaaggtgaataacaagtccacaatcaatttttgtatgttaggcataattaataaccattgc |
43621169 |
T |
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| Q |
114 |
tttacaaattgtttaactacttgtttaggatgatatggttatagcacaggatgaaatatttggtcctgtgatggcactgaagaagtttaagtaag |
208 |
Q |
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| T |
43621170 |
tttacaaattgtttaactacttgtttaggatgatatggttatagcacaggatgaaatatttggtcctgtgatggcactgaagaagtttaagtaag |
43621264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 43627930 - 43628001
Alignment:
| Q |
137 |
tttaggatgatatggttatagcacaggatgaaatatttggtcctgtgatggcactgaagaagtttaagtaag |
208 |
Q |
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| T |
43627930 |
tttaggaggacatgcttatagcacaggatgaaatatttggccctgtgatggcactaatgaagttcaagtaag |
43628001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 43621288 - 43621322
Alignment:
| Q |
222 |
ttatattgtagatttagtatatacaacctaatgtt |
256 |
Q |
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| T |
43621288 |
ttatattgtagatttagtatatacaacctaatgtt |
43621322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 43627784 - 43627821
Alignment:
| Q |
22 |
tactacattgaaccaacaattttctccaatataaaggt |
59 |
Q |
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| T |
43627784 |
tactacattgaacctacaattttctccaatgtaaaggt |
43627821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 32406590 - 32406535
Alignment:
| Q |
153 |
tatagcacaggatgaaatatttggtcctgtgatggcactgaagaagtttaagtaag |
208 |
Q |
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| T |
32406590 |
tatagcacaagatgaaatatttggccctgtcatggcactcatgaagttcaagtaag |
32406535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 32435100 - 32435153
Alignment:
| Q |
138 |
ttaggatgatatggttatagcacaggatgaaatatttggtcctgtgatggcact |
191 |
Q |
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| T |
32435100 |
ttaggatgacatgttaatagcacaagatgaaatatttggacctgttatggcact |
32435153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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