View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_53 (Length: 250)
Name: NF17649_low_53
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30276733 - 30276972
Alignment:
| Q |
1 |
aagaagtgactttctaggtgcacaagctcattttccactcctgtcacttcctctagtattctacacatgagaaaacaaagataagtacctcaacattata |
100 |
Q |
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||||||||| | |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276733 |
aagaagtgattctctaagtgcacaagctcattctccactcctgtcacttcctctagtattctacacatgagaaaacaaagataagtacctcaacattata |
30276832 |
T |
|
| Q |
101 |
tgccattcaacaataaaaagaataaagattagaaatctgattttgcaacctacgcaagagctaggtatgtaacatgcaggaatatccttcataaacatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276833 |
tgccattcaacaataaaaagaataaagattagaaatctgattttgcaacctacgcaagagctaggtatgtaacatgcaggaatatccttcataaacatga |
30276932 |
T |
|
| Q |
201 |
atgaacaatactagtccttcactttttataagcccctttg |
240 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |
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| T |
30276933 |
atgaacaatactagtccttctctttttataagcccctttg |
30276972 |
T |
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