View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_54 (Length: 249)
Name: NF17649_low_54
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 9800268 - 9800050
Alignment:
| Q |
15 |
aagcataacataaagcagattttgaaaatagaaaagaaccaaagtatctgctaatnnnnnnnnnnnnngtaacatattgtaacatcaaaacccctaacat |
114 |
Q |
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| T |
9800268 |
aagcataacataaagcagattttgaaaatagaaaagaaccaaagtatctgctaataaaaaaggaaaaagtaacatattgtaacatcaaaacccctaacat |
9800169 |
T |
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| Q |
115 |
gtgaaaggacaaaaagaacagtgttggtaacttcatgaagttgaaagacataccgtctagcttcagaaaggatatatgatgtactttaaccagtagctta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9800168 |
gtgaaaggacaaaaagaacagtgttggtaacttcatgaagttgaaagacataccttctagcttcagaaaggatatatgatgtaatttaaccagtagctta |
9800069 |
T |
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| Q |
215 |
gaattgtgaatgaaaaagg |
233 |
Q |
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|||||||||||||| |||| |
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| T |
9800068 |
gaattgtgaatgaagaagg |
9800050 |
T |
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