View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17649_low_55 (Length: 249)

Name: NF17649_low_55
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17649_low_55
NF17649_low_55
[»] chr5 (1 HSPs)
chr5 (1-228)||(7495782-7496010)
[»] chr8 (1 HSPs)
chr8 (2-40)||(13702363-13702401)
[»] chr7 (1 HSPs)
chr7 (1-35)||(47514254-47514288)
[»] chr2 (3 HSPs)
chr2 (2-40)||(3179370-3179408)
chr2 (5-51)||(36190089-36190135)
chr2 (1-37)||(34107323-34107359)
[»] chr1 (1 HSPs)
chr1 (2-35)||(50575952-50575985)
[»] chr4 (1 HSPs)
chr4 (1-37)||(11863163-11863199)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 7496010 - 7495782
Alignment:
Q  1 caaggtgaataagtgaggtgtctgaagttcgaacctcgactctaacatatattgtgaaatgttctttaccaacccaattaagtttatgagacgagacggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  7496010 caaggtgaataagtgaggtgtctgaagttcgaacctcgactccaacatatattacgaaatgttctttaccaacccaattaagtttatgagacgagacggt 7495911  T
Q  101 tacaaataattgtattatcatgtgataatataatattttgtatcccttatttattatattaaagatttaattggtattgt-nnnnnnntaactcgtgttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  7495910 tacaaataattgtattatcatgtgataatataatattttgtatcccttatttattatattaaagatttaattggtattgtaaaaaaaataactcgtgttt 7495811  T
Q  200 cttttggtacaattttactcatgtttttt 228  Q
    |||||||||||||||||||||||||||||    
T  7495810 cttttggtacaattttactcatgtttttt 7495782  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 13702363 - 13702401
Alignment:
Q  2 aaggtgaataagtgaggtgtctgaagttcgaacctcgac 40  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  13702363 aaggtgaataagtgaggtgtctgaggttcgaaccccgac 13702401  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 47514288 - 47514254
Alignment:
Q  1 caaggtgaataagtgaggtgtctgaagttcgaacc 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  47514288 caaggtgaataagtgaggtgtctgaagtttgaacc 47514254  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 3179408 - 3179370
Alignment:
Q  2 aaggtgaataagtgaggtgtctgaagttcgaacctcgac 40  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  3179408 aaggtgaataagtggggtgtctgaggttcgaacctcgac 3179370  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 36190135 - 36190089
Alignment:
Q  5 gtgaataagtgaggtgtctgaagttcgaacctcgactctaacatata 51  Q
    ||||||||||| ||||||||| |||||||||||||| || |||||||    
T  36190135 gtgaataagtggggtgtctgaggttcgaacctcgacccttacatata 36190089  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34107359 - 34107323
Alignment:
Q  1 caaggtgaataagtgaggtgtctgaagttcgaacctc 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  34107359 caaggtgaataagtggggtgtctggagttcgaacctc 34107323  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 50575985 - 50575952
Alignment:
Q  2 aaggtgaataagtgaggtgtctgaagttcgaacc 35  Q
    |||||||||||||||||||||||| |||||||||    
T  50575985 aaggtgaataagtgaggtgtctgaggttcgaacc 50575952  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11863163 - 11863199
Alignment:
Q  1 caaggtgaataagtgaggtgtctgaagttcgaacctc 37  Q
    ||||||||||||||  |||||||||||||||||||||    
T  11863163 caaggtgaataagtagggtgtctgaagttcgaacctc 11863199  T

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