View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17649_low_56 (Length: 244)
Name: NF17649_low_56
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 20511559 - 20511786
Alignment:
| Q |
1 |
tatcctcttcatctctaatgttcactctgcgaaggtgccaaccagagctggtacctccagctgcacccactcctcgtgaatttaaaatactatctgacat |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20511559 |
tatcctcttcatctctaatgttcactgtgcgaaggtgccaaccacagctggtacctccagctgcacccactcctcgtgaatttaaaatactatctgacat |
20511658 |
T |
|
| Q |
101 |
agatgatcaaaaaggtctccgttgcaatattcctctcatctttatctatcgtcatgagccattaatgacaaagaaagaccctgttaaggttcttagacat |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20511659 |
agatgatcaaaaaagtctccgttgcaatattcttctcatctttatctatcatcatgaaccattaatgacaaagaaagaccctgttaaggttcttagacat |
20511758 |
T |
|
| Q |
201 |
gcactctcacaagtacttgtgcattact |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
20511759 |
gcactctcacaagtacttgtgcattact |
20511786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 47301210 - 47301009
Alignment:
| Q |
19 |
tgttcactctgcgaaggtgccaaccagagctggtacctccagctgcacccactcctcgtgaatttaaaatactatctgacatagatgatcaaaaaggtct |
118 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||| || |||||||||||||||||| ||||| ||||| || |||||||||||||||||||| ||||| | |
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|
| T |
47301210 |
tgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactccttgtgaagttaaactattatctgacatagatgatcaagaaggttt |
47301111 |
T |
|
| Q |
119 |
ccgttgcaatattcctctcatctttatctatcgtcatgagccattaatgacaaagaaagaccctgttaaggttcttagacatgcactctcacaagtactt |
218 |
Q |
| |
|
|| | |||||||||| | ||||||||||||| ||| || |||| |||| || |||||||||||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
47301110 |
gcgcttcaatattcctatgatctttatctatcatcacgaaccatcaatggcagagaaagaccctgttaaggttctgagacatgcactctcacaagcactt |
47301011 |
T |
|
| Q |
219 |
gt |
220 |
Q |
| |
|
|| |
|
|
| T |
47301010 |
gt |
47301009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 47275139 - 47275332
Alignment:
| Q |
19 |
tgttcactctgcgaaggtgccaaccagagctggtacctccagctgcacccactcctcgtgaatttaaaatactatctgacatagatgatcaaaaaggtct |
118 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||| || |||||||||||||||||||| ||| ||||| || |||||||||||||||||||| || | | |
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|
| T |
47275139 |
tgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattatctgacatagatgatcaagaatgctt |
47275238 |
T |
|
| Q |
119 |
ccgttgcaatattcctctcatctttatctatcgtcatgagccattaatgacaaagaaagaccctgttaaggttcttagacatgcactctcacaa |
212 |
Q |
| |
|
|||| |||||| ||| |||| ||||||||||||||||| |||| ||||| | |||||||||||| ||||||||||| || ||||||||||||| |
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|
| T |
47275239 |
gcgtttcaatatgcctatcatatttatctatcgtcatgaaccatcaatgatagagaaagaccctgctaaggttcttaaacgtgcactctcacaa |
47275332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 47296621 - 47296409
Alignment:
| Q |
16 |
taatgttcactctgcgaaggtgccaaccagagctggtacctccagctgcacccactcctcgtgaatttaaaatactatctgacatagatgatcaaaaagg |
115 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| |||| || |||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||| |
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|
| T |
47296621 |
taatgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgtgaagttaaactattatctgacatagatgatcaagaagg |
47296522 |
T |
|
| Q |
116 |
tctccgttgcaatattcctctcatctttatctatcgtcatgagccattaatgacaaagaaagaccctgttaaggttcttagacatgcactctcacaagta |
215 |
Q |
| |
|
| | || | ||||| |||| |||| ||||||||||| || | |||| |||| | ||||||||||| ||||||| ||||||||||||||||||| | | |
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|
| T |
47296521 |
tatgcgattcaatagtcctgtcatatttatctatcgccacaaaccatcaatggtagagaaagaccctcttaaggtgcttagacatgcactctcacgaaca |
47296422 |
T |
|
| Q |
216 |
cttgtgcattact |
228 |
Q |
| |
|
|||||| |||||| |
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|
| T |
47296421 |
cttgtgtattact |
47296409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 47281886 - 47282067
Alignment:
| Q |
28 |
tgcgaaggtgccaaccagagctggtacctccagctgcacccactcctcgtgaatttaaaatactatctgacatagatgatcaaaaaggtctccgttgcaa |
127 |
Q |
| |
|
|||| ||||||||||||||| |||| || |||||||||||||||||||| ||| ||||| || |||||||||||||||||||| || || | |||| ||| |
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|
| T |
47281886 |
tgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattatctgacatagatgatcaagaatgtttgcgtttcaa |
47281985 |
T |
|
| Q |
128 |
tattcctctcatctttatctatcgtcatgagccattaatgacaaagaaagaccctgttaaggttcttagacatgcactctca |
209 |
Q |
| |
|
||| ||| |||| |||||||||||||| || |||| |||| |||||||||||||||||||||||||| | |||||||||| |
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|
| T |
47281986 |
tatgcctatcatatttatctatcgtcacgaaccatcaatggtaaagaaagaccctgttaaggttcttaaatgtgcactctca |
47282067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 47255527 - 47255718
Alignment:
| Q |
19 |
tgttcactctgcgaaggtgccaaccagagctggtacctccagctgcacccactcctcgtgaatttaaaatactatctgacatagatgatcaaaaaggtct |
118 |
Q |
| |
|
||||||| |||| |||| |||||||||| |||||| |||||||||||||||||||| |||| ||||| | || |||||||| ||||||||| |||| || |
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|
| T |
47255527 |
tgttcacagtgcggaggtcccaaccagagttggtacttccagctgcacccactcctcatgaagttaaactcctctctgacattgatgatcaagaaggcct |
47255626 |
T |
|
| Q |
119 |
ccgttgcaatattcctctcatctttatctatcgtcatgagccattaatgacaaagaaagaccctgttaaggttcttagacatgcactctcac |
210 |
Q |
| |
|
|||| |||| ||||| |||| ||| ||| ||||||||| || | ||||| | |||||||||||||||||||||||| |||||||||||||| |
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|
| T |
47255627 |
tcgtttcaatcttcctgtcatatttgtctttcgtcatgaaccttcaatgaaagagaaagaccctgttaaggttcttaaacatgcactctcac |
47255718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 47264571 - 47264772
Alignment:
| Q |
19 |
tgttcactctgcgaaggtgccaaccagagctggtacctccagctgcacccactcctcgtgaatttaaaatactatctgacatagatgatcaaaaaggtct |
118 |
Q |
| |
|
||||||| |||| ||| ||||||||||| |||| || |||||||||||||||||||| ||| ||||| || | |||||||||||||| ||| |||| | |
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|
| T |
47264571 |
tgttcacagtgcggaggagccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacatagatgaccaagaaggctt |
47264670 |
T |
|
| Q |
119 |
ccgttgcaatattcctctcatctttatctatcgtcatgagccattaatgacaaagaaagaccctgttaaggttcttagacatgcactctcacaagtactt |
218 |
Q |
| |
|
|||| |||||||||| | || ||||||||||||||||| || | ||||| | | ||||| |||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
47264671 |
acgtttcaatattcctatgatgtttatctatcgtcatgaaccgtcaatgaaagaaaaagatcctgttaaagttcttagacatgcactctcacaagcactt |
47264770 |
T |
|
| Q |
219 |
gt |
220 |
Q |
| |
|
|| |
|
|
| T |
47264771 |
gt |
47264772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 47240702 - 47240802
Alignment:
| Q |
16 |
taatgttcactctgcgaaggtgccaaccagagctggtacctccagctgcacccactcctcgtgaatttaaaatactatctgacatagatgatcaaaaagg |
115 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| |||| || |||||||||||||||||||| ||| ||||| || |||||||||||||||||||| |||| |
|
|
| T |
47240702 |
taatgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattatctgacatagatgatcaagaagg |
47240801 |
T |
|
| Q |
116 |
t |
116 |
Q |
| |
|
| |
|
|
| T |
47240802 |
t |
47240802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 32729240 - 32729449
Alignment:
| Q |
19 |
tgttcactctgcgaaggtgccaaccagagctggtacctccagctgcacccactcctcgtgaatttaaaatactatctgacatagatgatcaaaaaggtct |
118 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||| || |||| ||||||||||||||| ||| ||||| || ||||||| |||||||||||| ||||| | |
|
|
| T |
32729240 |
tgttcacagtgcggaggtgccaaccagagttggtgccaccagttgcacccactcctcgcgaagttaaactattatctgatatagatgatcaagaaggttt |
32729339 |
T |
|
| Q |
119 |
ccgttgcaatattcctctcatctttatctatcgtcatgagccattaatgacaaagaaagaccctgttaaggttcttagacatgcactctcacaagtactt |
218 |
Q |
| |
|
|||| |||| ||||| |||| ||||||||||||| || |||| |||| || ||||||||||| ||||||||||||||||||||||||||| | |||| |
|
|
| T |
32729340 |
gcgtttcaatgttcctgtcatatttatctatcgtcgcgaaccatcaatggcagagaaagaccctattaaggttcttagacatgcactctcacgaacactt |
32729439 |
T |
|
| Q |
219 |
gtgcattact |
228 |
Q |
| |
|
||| |||||| |
|
|
| T |
32729440 |
gtgtattact |
32729449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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