View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17649_low_58 (Length: 242)

Name: NF17649_low_58
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17649_low_58
NF17649_low_58
[»] chr8 (3 HSPs)
chr8 (143-226)||(43621587-43621670)
chr8 (1-60)||(43621445-43621504)
chr8 (183-222)||(43628079-43628118)


Alignment Details
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 43621587 - 43621670
Alignment:
Q  143 attatttttattttaatctcaaatatatttatggtatgaaatgtgaataacaggactattgaggaagcaattaagagtgctaat 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43621587 attatttttattttaatctcaaatatatttatggtatgaaatgtgaataacaggactattgaggaagcaattaagagtgctaat 43621670  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 43621445 - 43621504
Alignment:
Q  1 gattaaaatgtaaagctatttccagtagcttcaaaaaatgattttaatgagtgaaccatt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43621445 gattaaaatgtaaagctatttccagtagcttcaaaaaatgattttaatgagtgaaccatt 43621504  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 43628079 - 43628118
Alignment:
Q  183 atgtgaataacaggactattgaggaagcaattaagagtgc 222  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  43628079 atgtgaataacaggactattgaggaagccattaagagtgc 43628118  T

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