View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17649_low_59 (Length: 241)

Name: NF17649_low_59
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17649_low_59
NF17649_low_59
[»] chr7 (10 HSPs)
chr7 (10-223)||(38285985-38286198)
chr7 (10-172)||(38157467-38157629)
chr7 (80-192)||(38187678-38187790)
chr7 (10-178)||(38149723-38149891)
chr7 (10-184)||(38172943-38173117)
chr7 (10-47)||(43027890-43027927)
chr7 (10-46)||(42797047-42797083)
chr7 (10-47)||(35073093-35073130)
chr7 (10-47)||(35099430-35099467)
chr7 (10-46)||(35083169-35083205)
[»] chr3 (1 HSPs)
chr3 (10-223)||(2223391-2223604)
[»] chr2 (2 HSPs)
chr2 (13-215)||(12409457-12409659)
chr2 (13-215)||(12421517-12421719)
[»] chr6 (2 HSPs)
chr6 (84-186)||(4164034-4164136)
chr6 (84-186)||(4225655-4225757)
[»] chr5 (1 HSPs)
chr5 (10-47)||(9664007-9664044)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 38285985 - 38286198
Alignment:
Q  10 aagaatattcaagggatgagagatttgatgcaatgatatcgatactcctcctcttctggattttaacctgacaattaacaatgttcaaatttaacaatgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38285985 aagaatattcaagggatgagagatttgatgcaatgatatcgatactcctcctcttctggattttaacccgacaattaacaatgttcaaatttaacaatgt 38286084  T
Q  110 tgggctggttatttttaagtcagacttgaacttgcagtcatcaagggtgaagtctagaagatgaatgcagttggaaagtagacattgaatcaaatcctgt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38286085 tgggctggttatttttaagtcagacttgaacttgcagtcatcaagggtgaagtctagaagatgaatgcagttggaaagtagacattgaatcaaatcctgt 38286184  T
Q  210 ttcacagaaactag 223  Q
    ||||||||||||||    
T  38286185 ttcacagaaactag 38286198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 172
Target Start/End: Original strand, 38157467 - 38157629
Alignment:
Q  10 aagaatattcaagggatgagagatttgatgcaatgatatcgatactcctc-ctcttctggattttaacctgacaattaacaatgttcaaatttaacaatg 108  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| |   |||| || |  ||||||||||||||||||||  |||||||    
T  38157467 aagaatattcaatggatgagagatttgatgcaatgatatctatactcctcactctccca-atttgaatcccacaattaacaatgttcaaatgaaacaatg 38157565  T
Q  109 ttgggctggttatttttaagtcagacttgaacttgcagtcatcaagggtgaagtctagaagatg 172  Q
    |||  |||  ||||||||||||||||||||| |  || | ||||||||||||||||| ||||||    
T  38157566 ttgaactgactatttttaagtcagacttgaaatcacaatgatcaagggtgaagtctacaagatg 38157629  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 38187678 - 38187790
Alignment:
Q  80 acaattaacaatgttcaaatttaacaatgttgggctggttatttttaagtcagacttgaacttgcagtcatcaagggtgaagtctagaagatgaatgcag 179  Q
    ||||||||||||||||| ||  ||||||||||| ||| |||||||||||||||| ||||| |  || ||||||||||||||||||| ||||||||||||     
T  38187678 acaattaacaatgttcagatgaaacaatgttggactgattatttttaagtcagatttgaaatcacactcatcaagggtgaagtctacaagatgaatgcaa 38187777  T
Q  180 ttggaaagtagac 192  Q
    || |||| |||||    
T  38187778 tttgaaaatagac 38187790  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 38149723 - 38149891
Alignment:
Q  10 aagaatattcaagggatgagagatttgatgcaatgatatcgatactcctcctcttctggattttaacctgacaattaacaatgttcaaatttaacaatgt 109  Q
    |||||||||| | ||||||||||||||||||||||||||| ||| |||||  | ||   | || | |   ||| ||||||||||||||||  ||||||||    
T  38149723 aagaatattcgatggatgagagatttgatgcaatgatatctatattcctcaccctcccaagttgatctccacagttaacaatgttcaaatgaaacaatgt 38149822  T
Q  110 tgggctggttatttttaagtcagacttgaacttgcagtcatcaagggtgaagtctagaagatgaatgca 178  Q
    ||| ||||| |||||||||||||| || || |  || | |||||||||||||| || ||||||||||||    
T  38149823 tggactggtgatttttaagtcagagttcaaatcacactgatcaagggtgaagtttacaagatgaatgca 38149891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 38172943 - 38173117
Alignment:
Q  10 aagaatattcaagggatgagagatttgatgcaatgatatcgatactcctcctcttctggattttaacctgacaattaacaatgttcaaatttaacaatgt 109  Q
    ||||||||||||  ||||| ||||||||||||| |||||||||| || ||  | ||   |||| ||||   || ||||| ||||| ||||| |||||  |    
T  38172943 aagaatattcaattgatgacagatttgatgcaaagatatcgatattcttctccctcccaatttcaaccccgcagttaacgatgtttaaattaaacaactt 38173042  T
Q  110 tgggctggttatttttaagtcagacttgaacttgcagtcatcaagggtgaagtctagaagatgaatgcagttgga 184  Q
     || ||  ||||||| |||||||| |||||||  || |||| |||||||||||||| ||||||||||||| ||||    
T  38173043 cggactaattattttcaagtcagaattgaactcacaatcattaagggtgaagtctacaagatgaatgcagctgga 38173117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 43027927 - 43027890
Alignment:
Q  10 aagaatattcaagggatgagagatttgatgcaatgata 47  Q
    |||||||||||| |||||||||||||||||||||||||    
T  43027927 aagaatattcaaaggatgagagatttgatgcaatgata 43027890  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 42797083 - 42797047
Alignment:
Q  10 aagaatattcaagggatgagagatttgatgcaatgat 46  Q
    |||||||||||| ||||||||||||||||||||||||    
T  42797083 aagaatattcaaaggatgagagatttgatgcaatgat 42797047  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 35073093 - 35073130
Alignment:
Q  10 aagaatattcaagggatgagagatttgatgcaatgata 47  Q
    |||||||||| | |||||||||||||||||||||||||    
T  35073093 aagaatattcgaaggatgagagatttgatgcaatgata 35073130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 35099430 - 35099467
Alignment:
Q  10 aagaatattcaagggatgagagatttgatgcaatgata 47  Q
    |||||||||| | |||||||||||||||||||||||||    
T  35099430 aagaatattcgaaggatgagagatttgatgcaatgata 35099467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 35083169 - 35083205
Alignment:
Q  10 aagaatattcaagggatgagagatttgatgcaatgat 46  Q
    |||||||||| | ||||||||||||||||||||||||    
T  35083169 aagaatattcgaaggatgagagatttgatgcaatgat 35083205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 2223391 - 2223604
Alignment:
Q  10 aagaatattcaagggatgagagatttgatgcaatgatatcgatactcctcctcttctggattttaacctgacaattaacaatgttcaaatttaacaatgt 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||   |||||||||||||| ||||||||||||||    
T  2223391 aagaatattcaaaggatgagagatttgatgcaatgatatcgatattcctcctcttcttgattttaaccccgcaattaacaatgttgaaatttaacaatgt 2223490  T
Q  110 tgggctggttatttttaagtcagacttgaacttgcagtcatcaagggtgaagtctagaagatgaatgcagttggaaagtagacattgaatcaaatcctgt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  2223491 tgggctggttatttttaagtcagacttgaacttgcagtcatcaagggtgaagtctagaagatggatgcagttggaaagtagacattgaatcatatcctgt 2223590  T
Q  210 ttcacagaaactag 223  Q
    ||||||||||||||    
T  2223591 ttcacagaaactag 2223604  T

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Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 12409457 - 12409659
Alignment:
Q  13 aatattcaagggatgagagatttgatgcaatgatatcgatactcctcctcttctggattttaacctgacaattaacaatgttcaaatttaacaatgttgg 112  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||   | | |||||||  |||||||| |||||| ||||  |||||||||||    
T  12409457 aatattcaagagatgagagatttgatgcaatgatatcgatattcctcctctcaagcagtttaaccccacaattaagaatgttgaaatgaaacaatgttgg 12409556  T
Q  113 gctggttatttttaagtcagacttgaacttgcagtcatcaagggtgaagtctagaagatgaatgcagttggaaagtagacattgaatcaaatcctgtttc 212  Q
     ||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||| |||    
T  12409557 actgattatttttaagtcagacttgaacttgcaggtatcaagggtgaagtctagaagatggatgcagttggaaagtagtcattgaatcatatcctgcttc 12409656  T
Q  213 aca 215  Q
    |||    
T  12409657 aca 12409659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 12421517 - 12421719
Alignment:
Q  13 aatattcaagggatgagagatttgatgcaatgatatcgatactcctcctcttctggattttaacctgacaattaacaatgttcaaatttaacaatgttgg 112  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||   | | |||||||  |||||||| |||||| ||||  |||||||||||    
T  12421517 aatattcaagagatgagagatttgatgcaatgatatcgatattcctcctctcaagcagtttaaccccacaattaagaatgttgaaatgaaacaatgttgg 12421616  T
Q  113 gctggttatttttaagtcagacttgaacttgcagtcatcaagggtgaagtctagaagatgaatgcagttggaaagtagacattgaatcaaatcctgtttc 212  Q
     ||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||| |||    
T  12421617 actgattatttttaagtcagacttgaacttgcaggtatcaagggtgaagtctagaagatggatgcagttggaaagtagtcattgaatcatatcctgcttc 12421716  T
Q  213 aca 215  Q
    |||    
T  12421717 aca 12421719  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 4164034 - 4164136
Alignment:
Q  84 ttaacaatgttcaaatttaacaatgttgggctggttatttttaagtcagacttgaacttgcagtcatcaagggtgaagtctagaagatgaatgcagttgg 183  Q
    ||||||||||||||||  ||||||||||  |||||||||| || ||||||  |||| || |||| ||||||||||||||||| |||||| ||||||||||    
T  4164034 ttaacaatgttcaaatgaaacaatgttgaactggttatttgtatgtcagagatgaagttacagttatcaagggtgaagtctacaagatggatgcagttgg 4164133  T
Q  184 aaa 186  Q
    |||    
T  4164134 aaa 4164136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 4225655 - 4225757
Alignment:
Q  84 ttaacaatgttcaaatttaacaatgttgggctggttatttttaagtcagacttgaacttgcagtcatcaagggtgaagtctagaagatgaatgcagttgg 183  Q
    ||||||||||||||||  ||||||||||  |||||||||| || ||||||  |||| || |||| ||||||||||||||||| |||||| ||||||||||    
T  4225655 ttaacaatgttcaaatgaaacaatgttgaactggttatttgtatgtcagagatgaagttacagttatcaagggtgaagtctacaagatggatgcagttgg 4225754  T
Q  184 aaa 186  Q
    |||    
T  4225755 aaa 4225757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 9664044 - 9664007
Alignment:
Q  10 aagaatattcaagggatgagagatttgatgcaatgata 47  Q
    |||||||||| | |||||||||||||||||||||||||    
T  9664044 aagaatattcgaaggatgagagatttgatgcaatgata 9664007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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