View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_63 (Length: 227)
Name: NF17649_low_63
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_63 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 24 - 214
Target Start/End: Complemental strand, 9999153 - 9998963
Alignment:
| Q |
24 |
gttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagccttttta |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9999153 |
gttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtattttggaagccttttta |
9999054 |
T |
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| Q |
124 |
ggaagaggaagtatcggcttatcaacattttcaccattctttaatagtaccaatgatttcctcaccgcttccctagccaattccctatgct |
214 |
Q |
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| T |
9999053 |
ggaagaggaagtatcggcttatcaacattttcaccattctttaatagtaccaatgatttcctcaccgcttccctagccaattccctatgct |
9998963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 24 - 214
Target Start/End: Complemental strand, 10004869 - 10004679
Alignment:
| Q |
24 |
gttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagccttttta |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10004869 |
gttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagacttttta |
10004770 |
T |
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| Q |
124 |
ggaagaggaagtatcggcttatcaacattttcaccattctttaatagtaccaatgatttcctcaccgcttccctagccaattccctatgct |
214 |
Q |
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| T |
10004769 |
ggaagaggaagtatcggcttatcaacattttcaccattctttaatagtaccaatgattttctcaccgcttccctagccaattccctatgct |
10004679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 24 - 214
Target Start/End: Complemental strand, 9992018 - 9991828
Alignment:
| Q |
24 |
gttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagccttttta |
123 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
9992018 |
gttgccactaagtccttgccactgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacgagtatttttggagccttttta |
9991919 |
T |
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| Q |
124 |
ggaagaggaagtatcggcttatcaacattttcaccattctttaatagtaccaatgatttcctcaccgcttccctagccaattccctatgct |
214 |
Q |
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| T |
9991918 |
ggaagaggaagaagcggcttatcagcattttcaccattctttaatagtaccaatgatttcctcacagcttccctagccaattccctatgct |
9991828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 10013403 - 10013217
Alignment:
| Q |
28 |
ccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagcctttttaggaa |
127 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
10013403 |
ccactttgtccttgccatgtaatggtccatccaccacattgatttcctatattatcagcatggcttccagcaacaagtatttttggagcctttttaggaa |
10013304 |
T |
|
| Q |
128 |
gaggaagtatcggcttatcaacattttcaccattctttaatagtaccaatgatttcctcaccgcttccctagccaattccctatgct |
214 |
Q |
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|||||||||||||||||||| | ||| ||| ||||| |||||||||||||||||||| || ||||| ||||||||||| ||||||| |
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| T |
10013303 |
gaggaagtatcggcttatcagaacttttaccgttcttcaatagtaccaatgatttcctaacagcttctctagccaattctctatgct |
10013217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 33354068 - 33354163
Alignment:
| Q |
36 |
tccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagcctttttaggaagagg |
131 |
Q |
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| T |
33354068 |
tccttgccattcaatggtccagccaccacactgatatcctagattatttgcatggcttccggccacaagtatttttggaacctttttaggaagagg |
33354163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 33347014 - 33347123
Alignment:
| Q |
22 |
tcgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagcctttt |
121 |
Q |
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||||||||||| ||||||||||| ||||||||| ||||| || |||| ||||||||||| ||||| ||||| || |||||||| |||| | |||||| |
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| T |
33347014 |
tcgttgccactgactccttgccattcaatggtccagccaccgcactgatgtcctagattatttgcatggcttccggccacaagtatctttggaacctttt |
33347113 |
T |
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| Q |
122 |
taggaagagg |
131 |
Q |
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|||||||||| |
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| T |
33347114 |
taggaagagg |
33347123 |
T |
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