View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17649_low_64 (Length: 225)

Name: NF17649_low_64
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17649_low_64
NF17649_low_64
[»] chr3 (3 HSPs)
chr3 (133-224)||(20511480-20511571)
chr3 (4-83)||(20510475-20510554)
chr3 (76-122)||(20511401-20511447)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 20511480 - 20511571
Alignment:
Q  133 tcttattaattggttatttactcaatagttatattgtttctttcctctcgtgatagctaacaatttagcatggctttactatcctcttcatc 224  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20511480 tcttattaattggttttttattcaatagttatattgtttctttcctctcgtgatagctaacaatttagcatggctttactatcctcttcatc 20511571  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 20510475 - 20510554
Alignment:
Q  4 gtgattttaaattttatgcattacataactacaggtggcccccttgtaacaattagtcaagttcagccataccatatttc 83  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20510475 gtgattttaaattttatgcattacataactacaggtggcccgcttgtaacaattagtcaagttcagccataccatatttc 20510554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 20511401 - 20511447
Alignment:
Q  76 catatttcaacctcattttcaaatactccatttatatataaacgcac 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  20511401 catatttcaacctcattttcaaatactccatttatatataaacgcac 20511447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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