View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17649_low_65 (Length: 223)
Name: NF17649_low_65
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 2294014 - 2293831
Alignment:
| Q |
16 |
gtatgcaaagtattgtaacactgacagcctggttttgatttggattttggctctttaaacttgtcgaggagnnnnnnnaatttatatttttaatgtaaat |
115 |
Q |
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| T |
2294014 |
gtatgcaaagtattgtgacactgaccgcctggttttgatttggattttggctctttaaacttgtcgaggagtttttttaatttatatttttaatgtaaat |
2293915 |
T |
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| Q |
116 |
ttagggaatgattgagaaatcccgttttgctagggttaaaaaaactaaagcaagtagttaataaattagagtcgttttctttgt |
199 |
Q |
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| T |
2293914 |
ttagggaatgattgagaaatcccattttactagggttaaaaaaactaaagcaagcagttaataaattagagtcgttttctttgt |
2293831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 199
Target Start/End: Complemental strand, 2316437 - 2316285
Alignment:
| Q |
47 |
gttttgatttggattttggctctttaaacttgtcgaggagnnnnnnnaatttatattttt-aatgtaaatttagggaatgattgagaaatcccgttttgc |
145 |
Q |
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|||||||||||| |||||||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| || | |
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| T |
2316437 |
gttttgatttggggtttggctctt-aaacttgtcgaggagttttttaaatttatattttttaatgtaaattcagggaatgattgagaaatcccgtattac |
2316339 |
T |
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| Q |
146 |
tagggttaaa-aaaactaaagcaagtagttaataaattagagtcgttttctttgt |
199 |
Q |
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|| ||||||| ||||||||||||||||||||||||| | ||||| |||||||||| |
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| T |
2316338 |
tacggttaaaaaaaactaaagcaagtagttaataaa-tggagtcattttctttgt |
2316285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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