View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17649_low_66 (Length: 223)

Name: NF17649_low_66
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17649_low_66
NF17649_low_66
[»] chr5 (2 HSPs)
chr5 (12-202)||(41257208-41257398)
chr5 (98-155)||(3147170-3147227)
[»] chr3 (7 HSPs)
chr3 (123-198)||(7889145-7889219)
chr3 (98-155)||(24092379-24092436)
chr3 (123-198)||(28802760-28802836)
chr3 (160-195)||(25519474-25519509)
chr3 (98-149)||(31731944-31731995)
chr3 (123-193)||(50376231-50376299)
chr3 (98-139)||(3533997-3534038)
[»] chr4 (1 HSPs)
chr4 (137-198)||(34581591-34581653)
[»] chr6 (2 HSPs)
chr6 (124-192)||(33735428-33735497)
chr6 (125-193)||(14399815-14399883)
[»] chr8 (2 HSPs)
chr8 (125-193)||(12196924-12196992)
chr8 (125-193)||(12441352-12441420)
[»] chr7 (1 HSPs)
chr7 (98-136)||(6497163-6497201)
[»] chr1 (2 HSPs)
chr1 (161-198)||(32029897-32029934)
chr1 (98-197)||(19484781-19484880)
[»] scaffold0898 (1 HSPs)
scaffold0898 (125-193)||(534-602)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 41257208 - 41257398
Alignment:
Q  12 gataatactgtttttgttacattgttcttggagtttgttggaattttggttttgaaatcttttaatggtatggagcagtgttgtcatgtcaaatagcggc 111  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  41257208 gataatactgtttttgttacattgttcttggagttcgttggaattttggttttgaaatcttttaatggtatggagcagtgttctcatgtcaagtagcggc 41257307  T
Q  112 tatagtgtattggaattttaacaaaccgctattattccgtgatatgtgtttagtataaattgttgtcaaatagcggctatagtagcggtat 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41257308 tatagtgtattggaattttaacaaaccgctattattccgtgatatgtgtttagtataaattgttgtcaaatagcggctatagtagcggtat 41257398  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 3147227 - 3147170
Alignment:
Q  98 tgtcaaatagcggctatagtgtattggaattttaacaaaccgctattattccgtgata 155  Q
    ||||||||||||||||||| ||| |||||||| || |||||||||| ||| |||||||    
T  3147227 tgtcaaatagcggctatagcgtagtggaatttgaagaaaccgctatcattgcgtgata 3147170  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 7889145 - 7889219
Alignment:
Q  123 ggaattttaacaaaccgctattattccgtgatatgtgtttagtataaattgttgtcaaatagcggctatagtagcg 198  Q
    ||||||| ||||||| |||||| |||||||||||||| |||||| ||| ||||||||| || ||||||||| ||||    
T  7889145 ggaatttcaacaaactgctattgttccgtgatatgtg-ttagtacaaagtgttgtcaattaccggctatagcagcg 7889219  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 24092436 - 24092379
Alignment:
Q  98 tgtcaaatagcggctatagtgtattggaattttaacaaaccgctattattccgtgata 155  Q
    ||||||||||||||||||||| |  ||||||||||||||| |||| ||||||| ||||    
T  24092436 tgtcaaatagcggctatagtgaaacggaattttaacaaactgctactattccgcgata 24092379  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 28802836 - 28802760
Alignment:
Q  123 ggaattttaacaaaccgctattattccgtgatatg-tgtttagtataaattgttgtcaaatagcggctatagtagcg 198  Q
    ||||||||| |||||| ||||| ||||| |||||| | |||| |||||| ||||||||||||| |||||||| ||||    
T  28802836 ggaattttaccaaaccactattgttccgcgatatgctatttaatataaagtgttgtcaaatagtggctatagcagcg 28802760  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 25519509 - 25519474
Alignment:
Q  160 tttagtataaattgttgtcaaatagcggctatagta 195  Q
    ||||||| ||||||||||||||||||||||||||||    
T  25519509 tttagtacaaattgttgtcaaatagcggctatagta 25519474  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 31731944 - 31731995
Alignment:
Q  98 tgtcaaatagcggctatagtgtattggaattttaacaaaccgctattattcc 149  Q
    ||||||||||||||||||||||| |||||||| ||||||  |||||| ||||    
T  31731944 tgtcaaatagcggctatagtgtaatggaatttgaacaaattgctattgttcc 31731995  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 50376299 - 50376231
Alignment:
Q  123 ggaattttaacaaaccgctattattccgtgatatgtgtttagtataaattgttgtcaaatagcggctatag 193  Q
    ||||||||||||||||| |||||||| | | ||   |||||||| ||| ||||||||||||||||||||||    
T  50376299 ggaattttaacaaaccgttattattctgcggta--cgtttagtacaaaatgttgtcaaatagcggctatag 50376231  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 3533997 - 3534038
Alignment:
Q  98 tgtcaaatagcggctatagtgtattggaattttaacaaaccg 139  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  3533997 tgtcaaatagcagctatagtgttgtggaattttaacaaaccg 3534038  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 34581591 - 34581653
Alignment:
Q  137 ccgctattattccgtgatatg-tgtttagtataaattgttgtcaaatagcggctatagtagcg 198  Q
    |||||||| |||||||||| | | ||||||| ||| |||||||||||||||||||||||||||    
T  34581591 ccgctattgttccgtgatacgctatttagtacaaaatgttgtcaaatagcggctatagtagcg 34581653  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 33735497 - 33735428
Alignment:
Q  124 gaattttaacaaaccgctattattccgtgatatg-tgtttagtataaattgttgtcaaatagcggctata 192  Q
    ||||||||||||||| || || |||||||||||| | ||||||| ||| ||||||||||||||| |||||    
T  33735497 gaattttaacaaaccacttttgttccgtgatatgctatttagtacaaaatgttgtcaaatagcgactata 33735428  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 14399815 - 14399883
Alignment:
Q  125 aattttaacaaaccgctattattccgtgatatgtgtttagtataaattgttgtcaaatagcggctatag 193  Q
    ||||| |||||||||||||| ||  ||||||  | ||||||| ||| |||||||||||||| |||||||    
T  14399815 aatttaaacaaaccgctattgttttgtgatagctatttagtacaaagtgttgtcaaatagcagctatag 14399883  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 12196924 - 12196992
Alignment:
Q  125 aattttaacaaaccgctattattccgtgatatgtgtttagtataaattgttgtcaaatagcggctatag 193  Q
    |||||||||||||||||||| || ||  |||||||||||||| ||  |||||| ||||||| |||||||    
T  12196924 aattttaacaaaccgctattgtttcgctatatgtgtttagtacaatgtgttgtaaaatagcagctatag 12196992  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 12441352 - 12441420
Alignment:
Q  125 aattttaacaaaccgctattattccgtgatatgtgtttagtataaattgttgtcaaatagcggctatag 193  Q
    |||||||||||||||||||| || ||  |||||||||||||| ||  |||||| ||||||| |||||||    
T  12441352 aattttaacaaaccgctattgtttcgctatatgtgtttagtacaatgtgttgtaaaatagcagctatag 12441420  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 6497163 - 6497201
Alignment:
Q  98 tgtcaaatagcggctatagtgtattggaattttaacaaa 136  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  6497163 tgtcaaatagcggctatagtgtaatggaatttgaacaaa 6497201  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 32029934 - 32029897
Alignment:
Q  161 ttagtataaattgttgtcaaatagcggctatagtagcg 198  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  32029934 ttagtataaagtgttgtcaaatagcagctatagtagcg 32029897  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 19484880 - 19484781
Alignment:
Q  98 tgtcaaatagcggctatagtgtattggaattttaacaaaccgctattattccgtgatatgtg-tttagtataaattgttgtcaaatagcggctatagtag 196  Q
    |||||||||| |||||||| ||| || ||||||||||||| |||||| ||| | |||||| | |||||||  || ||||| |||| || |||||||||||    
T  19484880 tgtcaaatagtggctatagggtagtg-aattttaacaaactgctattgttctgggatatgcgatttagtacgaagtgttgacaaacagtggctatagtag 19484782  T

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Target: scaffold0898 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 534 - 602
Alignment:
Q  125 aattttaacaaaccgctattattccgtgatatgtgtttagtataaattgttgtcaaatagcggctatag 193  Q
    ||||| |||||||| ||||| ||| | ||||  | ||||||| ||||||||||||||||||| ||||||    
T  534 aatttaaacaaacctctattgttctgggatagctatttagtacaaattgttgtcaaatagcgcctatag 602  T

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