View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17649_low_7 (Length: 538)
Name: NF17649_low_7
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 85 - 521
Target Start/End: Original strand, 5328550 - 5328983
Alignment:
| Q |
85 |
aaaatgaatgaattattttaagttaatgtggcataatgataaccacaaaataacttttgatagagttcaccattaaagacgctcttatacaaagtagttc |
184 |
Q |
| |
|
||||||| ||| |||||| ||| | |||||| ||||||| || ||||||||||| |||||||||||| |||||| ||| ||| ||||||||||||||| |
|
|
| T |
5328550 |
aaaatgagtgagttatttcaagctgatgtggtataatgagaatcacaaaataacctttgatagagttaaccattgaaggtgcttttatacaaagtagttt |
5328649 |
T |
|
| Q |
185 |
ttttt-gttcattccacgttacgtatattttcaagtgggaaactcaaaagccaatatgnnnnnnnnnnnnnncaagacaagagaaactagcaatagcaga |
283 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5328650 |
ttttttgttcattccacgttacgtatattttcaagtgggaaactcaaaagccaatatgaaaaaaaa------caagacaagagaaactagcaatagcaga |
5328743 |
T |
|
| Q |
284 |
aaaggtgggaagaaaaatgtacgaaaggatatattatataagcttaagaagaaagacacatatacaaaggcatgaagtnnnnnnnnnnnnnnnnnn--tg |
381 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5328744 |
aaaggtgggaagaaaaatgtacgaaagcatatattatataagcttaagaagaaagacacatatacaaaggcatgaagtaaaaataaaaaaaataaaaatg |
5328843 |
T |
|
| Q |
382 |
gtcaattacttggattagacaaaccaacaatttcggcttatgattcgttacttccatctcttaacataaccatttgtccttccttgacattaacnnnnnn |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5328844 |
gtcaattacttggattagacaaaccaacaatttcggcttatgattcgttacttccatctcttaacataaccatttgtccttccttgacattaacaaaaaa |
5328943 |
T |
|
| Q |
482 |
ncattaattcccacaaaaccatgccacaagctattcttac |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5328944 |
acattaattcccacaaaaccatgccacaagctattcttac |
5328983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University