View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17649_low_9 (Length: 530)
Name: NF17649_low_9
Description: NF17649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17649_low_9 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 16 - 518
Target Start/End: Original strand, 36955276 - 36955778
Alignment:
| Q |
16 |
atttctttgggtttctaacaattgaaatgggattcaaaaacaatatcaaagtcttagttttttctgtcttgatcttcctcgtaatcccaactctaatagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36955276 |
atttctttgggtttctaacaattgaaatgggattcaaaaacaatatcaaagtcttagttttttctgtcttgatcttcctcgtaatcccaactctaatagc |
36955375 |
T |
|
| Q |
116 |
cgcagaatgcacatgtgatgaggaagatgaagatagagacaaagccaaagccttacgttacaaaatagcagctttagtgtcaattttagttgcaagtgca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
36955376 |
cgcagaatgcacatgtgatgaggaagatgaagatagagacaaagccaaagccttacgttacaaaatagcagctttagtgtcaattttagttgtaagtgca |
36955475 |
T |
|
| Q |
216 |
attggtgtttttatcccacttcttggcaaagtaataccggcgttaagccctgaaaaagatatatttttcatcattaaaacctttgctgccggtgtgatat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36955476 |
attggtgtttttatcccacttcttggcaaagtaataccggcgttaagccctgaaaaagatatatttttcatcattaaaacctttgctgccggtgtgatat |
36955575 |
T |
|
| Q |
316 |
tatccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttcaccttgtttaaaggaacatccttggggtgattttccattcaccggttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36955576 |
tatccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttcaccttgtttaaaggaacatccttggggtgattttccattcaccggttt |
36955675 |
T |
|
| Q |
416 |
tgtggctatgtgcactgctatggggtctctcatggttgatacttatgccaccgcttattttcagaatcgttattctaaaagggcatcaacgttgacacag |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
36955676 |
tgtggctatgtgcactgctatggggtctctcatggttgatacttatgccaccgcttattttcagaatcgtcattctaaaaaggcatcaacgttgacacag |
36955775 |
T |
|
| Q |
516 |
gtt |
518 |
Q |
| |
|
||| |
|
|
| T |
36955776 |
gtt |
36955778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 500
Target Start/End: Original strand, 36938568 - 36939048
Alignment:
| Q |
20 |
ctttgggtttctaacaattgaaatgggattcaaaaacaatatcaaagtcttagttttttctgtcttgatcttcctcgtaatcccaactctaatagccgca |
119 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||||||| ||||||||| ||||| ||| ||||||| ||||| ||||||| |||||||||||||| |
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|
| T |
36938568 |
ctttgagtttctaaccattgaaatgggattaaaaaacaataacaaagtctttgttttctctatcttgatattccttataatcccgactctaatagccgcc |
36938667 |
T |
|
| Q |
120 |
gaatgcacatgtgatgaggaagatgaagatagagacaaagccaaagccttacgttacaaaatagcagctttagtgtcaattttagttgcaagtgcaattg |
219 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||||||||| ||||||| | ||||| || |||||||||||||| ||||| ||||||||||||| ||||| |
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|
| T |
36938668 |
gaatgcacgtgtgatgaagaagatttagatagagacaaacccaaagctcttcgttataagatagcagctttagtatcaatattagttgcaagtggaattg |
36938767 |
T |
|
| Q |
220 |
gtgtttttatcccacttcttggcaaagtaataccggcgttaagccctgaaaaagatatatttttcatcattaaaacctttgctgccggtgtgatattatc |
319 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||| || | |
|
|
| T |
36938768 |
gtgtttgtattccacttcttggcaaagtgataccggcgttaagccccgaaaaagatatatttttcatcatcaaagcctttgctgctggtgtgattttggc |
36938867 |
T |
|
| Q |
320 |
caccggtttcattcatgtgcttcctgatgcttttgagaatcttacttcaccttgtttaaaggaacatccttggggtgattttccattcaccggttttgtg |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||| |
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|
| T |
36938868 |
aaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttcacctcgtttaaagaaacatccttggggtgattttccattcactggttttgtg |
36938967 |
T |
|
| Q |
420 |
gctatgtgcactgctatggggtctctcatggttgatacttatgccaccgcttattttcagaatcgttattctaaaagggca |
500 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| || | |||||| |||| |||| |
|
|
| T |
36938968 |
gctatgtgcactgctatggggactcttatggttgatacttatgccactgcttattttcaaaaccattattccaaaaaggca |
36939048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 20 - 456
Target Start/End: Original strand, 36950795 - 36951228
Alignment:
| Q |
20 |
ctttgggtttctaacaattgaaatgggattcaaaaacaatatcaaagtcttagttttttctgtcttgatcttcctcgtaatcccaactctaatagccgca |
119 |
Q |
| |
|
||||| ||||||||| |||||||||||||| ||||| ||| ||||||||| ||||| ||| ||||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
36950795 |
ctttgagtttctaaccattgaaatgggattaaaaaa--ataacaaagtctttgttttctctatcttgatcttccttgtaaccccgactctaatagccgca |
36950892 |
T |
|
| Q |
120 |
gaatgcacatgtgatgaggaagatgaagatagagacaaagccaaagccttacgttacaaaatagcagctttagtgtcaattttagttgcaagtgcaattg |
219 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||||||| |||||||| | ||||| || |||||||||||||| ||||| |||||||||||| ||||| |
|
|
| T |
36950893 |
gaatgcacatgcgataaagaagatgaagatagagacaaatccaaagcccttcgttataagatagcagctttagtatcaatactagttgcaagtggaattg |
36950992 |
T |
|
| Q |
220 |
gtgtttttatcccacttcttggcaaagtaataccggcgttaagccctgaaaaagatatatttttcatcattaaaacctttgctgccggtgtgatattatc |
319 |
Q |
| |
|
|||||| ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| || | |
|
|
| T |
36950993 |
gtgtttgtattccacttctaggcaaagtgataccggcgttaagccctgaaaaagatatatttttcattattaaagcctttgctgctggtgtgattttggc |
36951092 |
T |
|
| Q |
320 |
caccggtttcattcatgtgcttcctgatgcttttgagaatcttacttcaccttgtttaaaggaacatccttggggtgattttccattcaccggttttgtg |
419 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36951093 |
caccggtttcattcacgtgcttcctgatgcttttgagaatcttacttcacc-tgtttaaaggaacatccttggggtgattttccattcaccggttttgtg |
36951191 |
T |
|
| Q |
420 |
gctatgtgcactgctatggggtctctcatggttgata |
456 |
Q |
| |
|
|||||||||||||| |||||| ||| |||||||||| |
|
|
| T |
36951192 |
gctatgtgcactgccatggggattcttatggttgata |
36951228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 100 - 500
Target Start/End: Original strand, 36993041 - 36993441
Alignment:
| Q |
100 |
tcccaactctaatagccgcagaatgcacatgtgatgaggaagatgaagatagagacaaagccaaagccttacgttacaaaatagcagctttagtgtcaat |
199 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| || ||||||||||| || |||| | | ||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
36993041 |
tcccaactctaatagctgcagagtgcacatgtgacgaagaagatgaagaaagggacagatcaaaagctctacgctacaaaatagcggctttagtgtcaat |
36993140 |
T |
|
| Q |
200 |
tttagttgcaagtgcaattggtgtttttatcccacttcttggcaaagtaataccggcgttaagccctgaaaaagatatatttttcatcattaaaaccttt |
299 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| ||| | ||| |
|
|
| T |
36993141 |
attagttgcaagtgcaattggtgtttgtctcccacttcttgggaaagtgataccggcattaagccctgaaaaagatatattttttatcatcaaagcattt |
36993240 |
T |
|
| Q |
300 |
gctgccggtgtgatattatccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttcaccttgtttaaaggaacatccttggggtgatt |
399 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
36993241 |
gctgccggtgtgatactgtccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttctccatgtttaaacgaacatccttggggtgatt |
36993340 |
T |
|
| Q |
400 |
ttccattcaccggttttgtggctatgtgcactgctatggggtctctcatggttgatacttatgccaccgcttattttcagaatcgttattctaaaagggc |
499 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
36993341 |
ttcccttcactggttttgtagctatgtgcaccgctatggggactcttatggttgatacttatgcaaccgcttattttcagaaccattattctaaaagggc |
36993440 |
T |
|
| Q |
500 |
a |
500 |
Q |
| |
|
| |
|
|
| T |
36993441 |
a |
36993441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 100 - 500
Target Start/End: Original strand, 37018481 - 37018881
Alignment:
| Q |
100 |
tcccaactctaatagccgcagaatgcacatgtgatgaggaagatgaagatagagacaaagccaaagccttacgttacaaaatagcagctttagtgtcaat |
199 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| || ||||||||||| || |||| | | ||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
37018481 |
tcccaactctaatagctgcagagtgcacatgtgacgaagaagatgaagaaagggacagatcaaaagctctacgctacaaaatagcggctttagtgtcaat |
37018580 |
T |
|
| Q |
200 |
tttagttgcaagtgcaattggtgtttttatcccacttcttggcaaagtaataccggcgttaagccctgaaaaagatatatttttcatcattaaaaccttt |
299 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| ||| | ||| |
|
|
| T |
37018581 |
attagttgcaagtgcaattggtgtttgtctcccacttcttgggaaagtgataccggcattaagccctgaaaaagatatattttttatcatcaaagcattt |
37018680 |
T |
|
| Q |
300 |
gctgccggtgtgatattatccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttcaccttgtttaaaggaacatccttggggtgatt |
399 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
37018681 |
gctgccggtgtgatactgtccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttctccatgtttaaacgaacatccttggggtgatt |
37018780 |
T |
|
| Q |
400 |
ttccattcaccggttttgtggctatgtgcactgctatggggtctctcatggttgatacttatgccaccgcttattttcagaatcgttattctaaaagggc |
499 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
37018781 |
ttcccttcactggttttgtagctatgtgcaccgctatggggactcttatggttgatacttatgcaaccgcttattttcagaaccattattctaaaagggc |
37018880 |
T |
|
| Q |
500 |
a |
500 |
Q |
| |
|
| |
|
|
| T |
37018881 |
a |
37018881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 269 - 422
Target Start/End: Complemental strand, 36951438 - 36951288
Alignment:
| Q |
269 |
aaaagatatatttttcatcattaaaacctttgctgccggtgtgatattatccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttca |
368 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36951438 |
aaaagatatatttttcatcattaaagcctttgctg---gtgtgattttggccaccggtttcattcacgtgcttcctgatgcttttgagaatcttacttca |
36951342 |
T |
|
| Q |
369 |
ccttgtttaaaggaacatccttggggtgattttccattcaccggttttgtggct |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36951341 |
ccttgtttaaaggaacatccttggggtgattttccattcaccggttttgtggct |
36951288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 433
Target Start/End: Complemental strand, 36951288 - 36951250
Alignment:
| Q |
395 |
tgattttccattcaccggttttgtggctatgtgcactgc |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36951288 |
tgattttccattcaccggttttgtggctatgtgcactgc |
36951250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 404
Target Start/End: Complemental strand, 27253541 - 27253396
Alignment:
| Q |
259 |
taagccctgaaaaagatatatttttcatcattaaaacctttgctgccggtgtgatattatccaccggtttcattcatgtgcttcctgatgcttttgagaa |
358 |
Q |
| |
|
|||||||| |||| || ||||||||||| |||||| |||| || |||||||| || || | |||||||| ||||| | ||||| ||||| || |||| |
|
|
| T |
27253541 |
taagccctaaaaatgacatatttttcatgattaaagccttcgcggccggtgtaattttggcaaccggttttattcacatacttccggatgcattcgagag |
27253442 |
T |
|
| Q |
359 |
tcttacttcaccttgtttaaaggaacatccttggggtgattttcca |
404 |
Q |
| |
|
| | | ||| |||||| | |||||| | |||||||||||||||||| |
|
|
| T |
27253441 |
tttgaattcgccttgtcttaaggaaaaaccttggggtgattttcca |
27253396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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