View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1764_high_6 (Length: 250)
Name: NF1764_high_6
Description: NF1764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1764_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2525402 - 2525635
Alignment:
| Q |
1 |
atagttgaagaagtttatgtacggaactgcagcttcattgatactacaaatggagcaagaatcaagacatttcctgtgagtaattactactatagtttgt |
100 |
Q |
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| T |
2525402 |
atagttgaagaagtttatgtacggaactgcagcttcattgatactacaaatggagcaagaatcaagacatttcctgtgagtaattactactatagtttgt |
2525501 |
T |
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| Q |
101 |
gttgggaaattactaacatatgatcacatttgctaactataattctacttcactttttctttagcagatgtaagtagaaattagtaaattataactatgt |
200 |
Q |
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| T |
2525502 |
ggtgggaaattac-aacatatgatcacatttgctaactataattctacttcaccttttctttagcaaatgtaagtagaaattagtaaattataactatgt |
2525600 |
T |
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| Q |
201 |
aaataattatatattactatttttctaatagagat |
235 |
Q |
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| T |
2525601 |
aaataattatatattactatttttctaatagagat |
2525635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 32925719 - 32925798
Alignment:
| Q |
4 |
gttgaagaagtttatgtacggaactgcagcttcattgatactacaaatggagcaagaatcaagacatttcctgtgagtaa |
83 |
Q |
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| T |
32925719 |
gttgaagaagttaatgtaccaaactgcagcttcactaatactacaaatggagcaagaatcaaaacatttcctgtgagtaa |
32925798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 11658262 - 11658182
Alignment:
| Q |
3 |
agttgaagaagtttatgtacggaactgcagcttcattgatactacaaatggagcaagaatcaagacatttcctgtgagtaa |
83 |
Q |
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|||||||||||||||||||| || || ||||||| | | |||||||||||||| |||||||||||||||||||||||||| |
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| T |
11658262 |
agttgaagaagtttatgtacataattgtagcttcactaacactacaaatggagctagaatcaagacatttcctgtgagtaa |
11658182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 13559004 - 13559043
Alignment:
| Q |
44 |
ctacaaatggagcaagaatcaagacatttcctgtgagtaa |
83 |
Q |
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| T |
13559004 |
ctacaaatggagcaagaataaagacatttccggtgagtaa |
13559043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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