View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1764_high_7 (Length: 238)
Name: NF1764_high_7
Description: NF1764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1764_high_7 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 47107248 - 47107027
Alignment:
| Q |
18 |
actattacctctcttcactttgtagctttgattttgattatcaatcatggtttgaaccatttggatatactctattttttcctttcattgctggaaatca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| | |
|
|
| T |
47107248 |
actattacctctcttcactttgtagctttgatttagattatcaatcatgttttgaaccatttggatatactctatttttcccttttattgctgg-aatta |
47107150 |
T |
|
| Q |
118 |
attctctaagtgggttataaaagtgacacatcttagttatatttttcatgcaagcctaaattatgggctatttggc--taggtagaaaaaatattttggc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
47107149 |
attctctaagtgggttataaaagtgacacatcttagttatattttttatacaagcctaaattatgggctatttggctataggtagaaaaaatatattggc |
47107050 |
T |
|
| Q |
216 |
attgttaggaagagaagagaggt |
238 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
47107049 |
attgttaggaagagaagagaggt |
47107027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 6815819 - 6815779
Alignment:
| Q |
42 |
gctttgattttgattatcaatcatggtttgaaccatttgga |
82 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
6815819 |
gctttgactttgattatcaatcattgtttgaaccatttgga |
6815779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University