View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1764_low_1 (Length: 610)
Name: NF1764_low_1
Description: NF1764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1764_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 7 - 604
Target Start/End: Complemental strand, 29933094 - 29932496
Alignment:
| Q |
7 |
ctctgttccacagtagtcgcaactatcactgcagcttctcaactgcggtgatagttcagccgagacaccagaatggcggtggcactcgtggaagcttcta |
106 |
Q |
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| T |
29933094 |
ctctgttccacagtagtcgcaactatcactgcagcttctcaactgcggtgatagttcagccgagacaccagaatggcggtggcactcgtggaagcttcta |
29932995 |
T |
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| Q |
107 |
ctggcagcagatgtcaactctgccagagaaaaagtatcagcattcagaggagaataagaacaggaatgacagcgaaaccgtcgtttcgagttactgggga |
206 |
Q |
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| T |
29932994 |
ctggcagaagatgtcaactctgccagagaaaaaggatcagcattcagaggagaataagaacagtaatgacagcaacaccgtcgtttcgagttactgggga |
29932895 |
T |
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| Q |
207 |
atcactaggcccaaggttaaaagggaggatggaactgaggggacgcggaactggttcacgttaagaatatatactatatagaggaggtatcaaaattaat |
306 |
Q |
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| T |
29932894 |
atcactaggcccaaggttaaaagggaggatggaactgagtggccatggaactgtttcatggtaagaatatatactatatagaggaggtatcaaaattaat |
29932795 |
T |
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| Q |
307 |
gtatgcataagtaaatctgaactgagttattctgcttaataattcattataaatgttgaa-ttatttatgttaatgatcatacacnnnnnnnntcttatg |
405 |
Q |
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| T |
29932794 |
gtatgcataagtaaatctgaactgagttattctgcttaataattcattataaatgttgaatttatttatgttaatgatcatacacaaaaaaaatcttatg |
29932695 |
T |
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| Q |
406 |
aacctaaaatttgtagatagacttatttatattatattttgatttgaatttatttaatagaccatcgagtaattttattcaaatttatcgagttgagcta |
505 |
Q |
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| T |
29932694 |
aacctaaaatttgtagatagacttatttatattatatgttgatttgaatttattcaatagagcatcaagtaattttattcaaatttgtcgagctgagcta |
29932595 |
T |
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| Q |
506 |
ttcgataaaaacttttgatttaagcattagatcaatgaaattcaatgttaatctagcagtattgtattttgataatgtctcatatgatatgttctctat |
604 |
Q |
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| T |
29932594 |
ttcgataaaaacttttgatttaagcattagatcaatgaaattcaatgttgatctaacagtattgtatttcgataatgtctcatactatatgttctctat |
29932496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 29935778 - 29935643
Alignment:
| Q |
27 |
aactatcactgcagcttctcaactgcggtgatagttcagccgagac---accagaatggcggtggcactcgtggaagcttctactggcagcagatgtcaa |
123 |
Q |
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| T |
29935778 |
aactaccaccgcagcttctcaactgcggtgatagttcagccgagacaccaccagcatggcggcggtgcttgtggaaacttgtactggcagaggatgtcaa |
29935679 |
T |
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| Q |
124 |
ctctgccagagaaaaagtatcagcattcagaggaga |
159 |
Q |
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| T |
29935678 |
ctttgccagagaaaaaggatcagcagacagaggaga |
29935643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 29935618 - 29935527
Alignment:
| Q |
184 |
ccgtcgtttcgagttactggggaatcactaggcccaaggttaaaagggaggatggaactgaggggacgcggaactggttcacgttaagaata |
275 |
Q |
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|||||||||||||||||||||| |||| |||||| |||||| | ||| |||||||||||| || | ||||||| |||| | |||||||| |
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| T |
29935618 |
ccgtcgtttcgagttactggggtatcagtaggcctaaggttcttaaggaagatggaactgagtggccatggaactgcttcatggtaagaata |
29935527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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