View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1764_low_3 (Length: 318)
Name: NF1764_low_3
Description: NF1764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1764_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 31 - 298
Target Start/End: Original strand, 14811761 - 14812028
Alignment:
| Q |
31 |
atcatctttatatcccttgctctacaagaaaaaatcactatccttttttaaaatatttgacttcaagttcaagccgttattagcaaggaacttcatttct |
130 |
Q |
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| T |
14811761 |
atcatctttatatcccttgctctacaagaaaaaatcactatcctttttaaaaatatttgacttcaagttcaagccgttattagcaaggaacttca-ttct |
14811859 |
T |
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| Q |
131 |
ttcattctcgaagcccgaaggtgagaagaaacctcccccgcgtgaatagtttgaacacacaaaacgtgtgaatctattc--aaaaaaggaaaatcccnnn |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14811860 |
ttcattctcgaagcccgaaggtgagaagaaacctcccccgcgtgaatagtttgaacacacaaaacgtgtgaatctattcaaaaaaaaggaaaatccc-ct |
14811958 |
T |
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| Q |
229 |
nnnnnncactagaggaccaaatgaaaaatcaacggtgacccatatttggatagccacgtggcatctcacc |
298 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14811959 |
ttttttcactagaagaccaaatgaaaaatcaacggtgacccatatttgaatagccacgtggcatctcacc |
14812028 |
T |
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