View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1764_low_5 (Length: 286)
Name: NF1764_low_5
Description: NF1764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1764_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 38175745 - 38175488
Alignment:
| Q |
17 |
agaaaacaaagaaacaataatgaaattgagtatgcaaaacttgattcaccaaaagaccaccataccatccaatattccatcaagaacttggaacataaga |
116 |
Q |
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| T |
38175745 |
agaaaacaaagaaacaataatgaaatcgagtatgcaaaacttgattcaccaaaagaccaccataccatccaatattccatcaagaacttggaacataaga |
38175646 |
T |
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| Q |
117 |
tttgatcagagacttcttggatcttcctcgtactgcacctatctttaccatcaaacaccatgtcattgcaagtactagtgctgaaaaacgacccaacaca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38175645 |
tttgatcagagacttcttggatcttcctcgtactgcacctatctttaccatcaaacaccatgtcattgcaagtactagtgctggaaaacgacccaacaca |
38175546 |
T |
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| Q |
217 |
agcccaacaagtgcaattccaaataaaatcatgtaatctgaattccctactctcttca |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38175545 |
agcccaacaagtgcaattccaaataaaatcatgtaatctgaattccctactctcttca |
38175488 |
T |
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