View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1764_low_7 (Length: 250)
Name: NF1764_low_7
Description: NF1764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1764_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 6 - 126
Target Start/End: Complemental strand, 36970172 - 36970052
Alignment:
| Q |
6 |
agcagcacagagcacatccatatcaggcaaaaattcccaatcctccatgatttctcaccctttagaacccatcaatcatgaagccaatgaagagaaactc |
105 |
Q |
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| T |
36970172 |
agcaacactgagcacgtccatatcaggcgaaaattcccaattctccatgatttctcaccctttagaacccatcaatcatgaagccaatgaagagaaactc |
36970073 |
T |
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| Q |
106 |
acctgaaaatacagaaaacaa |
126 |
Q |
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| T |
36970072 |
acctgaaaatacagaaaacaa |
36970052 |
T |
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Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 44253057 - 44253235
Alignment:
| Q |
58 |
tctcaccctttagaacccatcaatcatgaagccaatgaagagaaactcacctgaaaatacagaaaacaatatttgagagagnnnnnnnnntacaccggcc |
157 |
Q |
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||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |
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| T |
44253057 |
tctcaccctttagaaccgatcaatcatgaagctcaagaagagaaactcacctgaaaatacagaaaacaatatttgagaaa-----aaaaatacaccagcc |
44253151 |
T |
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| Q |
158 |
atcaggaagctatagatttgttcactgtgtagaacattttgtcttgtatgaggaaagtataataccaaaagcatttaaaaatac |
241 |
Q |
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|||||||||||| |||||||||||||||||| | || ||||| ||||||||||||| || |||||||||||||||||| ||||| |
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| T |
44253152 |
atcaggaagctaaagatttgttcactgtgtaaagcaatttgttttgtatgaggaaattaaaataccaaaagcatttaagaatac |
44253235 |
T |
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