View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1764_low_9 (Length: 249)
Name: NF1764_low_9
Description: NF1764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1764_low_9 |
 | |
|
| [»] chr5 (9 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 34 - 249
Target Start/End: Original strand, 13447064 - 13447279
Alignment:
| Q |
34 |
tcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttac |
133 |
Q |
| |
|
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447064 |
tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttac |
13447163 |
T |
|
| Q |
134 |
cattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctacttt |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447164 |
cattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatcccacccctacttt |
13447263 |
T |
|
| Q |
234 |
gtctccaactttaaac |
249 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13447264 |
gtctccaactttaaac |
13447279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 34 - 249
Target Start/End: Original strand, 13419513 - 13419728
Alignment:
| Q |
34 |
tcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttac |
133 |
Q |
| |
|
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||| |||| |
|
|
| T |
13419513 |
tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactttg |
13419612 |
T |
|
| Q |
134 |
cattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctacttt |
233 |
Q |
| |
|
|| |||| ||| || | | |||||||||||||| |||||| |||||||||| || ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
13419613 |
caccacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaacttt |
13419712 |
T |
|
| Q |
234 |
gtctccaactttaaac |
249 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13419713 |
gtctccaactttaaac |
13419728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 13426389 - 13426619
Alignment:
| Q |
19 |
agaggaccagcaaattcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgc |
118 |
Q |
| |
|
|||||||| |||| |||||||||| | | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||| ||| |
|
|
| T |
13426389 |
agaggaccggcaacatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgc |
13426488 |
T |
|
| Q |
119 |
catcacgagacttaccattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgta |
218 |
Q |
| |
|
|||||||| ||||| || |||| || | || || |||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
13426489 |
catcacgatacttagcaccacatgtaactgtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgta |
13426588 |
T |
|
| Q |
219 |
tcccacccctactttgtctccaactttaaac |
249 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
13426589 |
tcccactcctactttgtctccaactttaaac |
13426619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 13413142 - 13413383
Alignment:
| Q |
8 |
cagcacagaggagaggaccagcaaattcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccata |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13413142 |
cagcacaaaggagaggaccagcaaattcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccata |
13413241 |
T |
|
| Q |
108 |
ggtgatagtgccatcacgagacttaccattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaa |
207 |
Q |
| |
|
|||| || ||||||||| |||| || |||| | |||||| |||||||||||||| || ||| ||||| || || || ||||||||| |
|
|
| T |
13413242 |
agtgacggttccatcacgatacttggcaccacatgtgactacaaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaa |
13413341 |
T |
|
| Q |
208 |
tcaaccatgtatcccacccctactttgtctccaactttaaac |
249 |
Q |
| |
|
|||| || ||| || || |||||||||||||||||||||||| |
|
|
| T |
13413342 |
tcaatcaagtagccaacacctactttgtctccaactttaaac |
13413383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 13389108 - 13389026
Alignment:
| Q |
160 |
cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaac |
242 |
Q |
| |
|
|||||||| |||| || ||| ||||||||| ||| || |||||||||||||||||||| || || ||||||||||||||||| |
|
|
| T |
13389108 |
cagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaac |
13389026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 13393665 - 13393562
Alignment:
| Q |
10 |
gcacagaggagaggaccagcaaattcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccatagg |
109 |
Q |
| |
|
||||| ||||||||| ||||| ||||||| |||| | ||||||||| ||| | ||||||||| ||||||||||||||||| ||| | |||||||| | |
|
|
| T |
13393665 |
gcacaaaggagaggagcagcagattcaagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatg |
13393566 |
T |
|
| Q |
110 |
tgat |
113 |
Q |
| |
|
|||| |
|
|
| T |
13393565 |
tgat |
13393562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 13454035 - 13454089
Alignment:
| Q |
52 |
ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccat |
106 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||||||| ||||| ||||||| |
|
|
| T |
13454035 |
ggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat |
13454089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 13385288 - 13385205
Alignment:
| Q |
159 |
gcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaac |
242 |
Q |
| |
|
||||||||| |||| || ||| ||||||||| ||| || ||||||||||||| ||||| || || ||||||||||||||||| |
|
|
| T |
13385288 |
gcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaac |
13385205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 13454143 - 13454228
Alignment:
| Q |
160 |
cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaacttt |
245 |
Q |
| |
|
||||||||||||| || || ||||||||| ||| || |||| |||||||||| | ||||||| |||||| ||||||||||||| |
|
|
| T |
13454143 |
cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaacttt |
13454228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 47601353 - 47601427
Alignment:
| Q |
52 |
ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacga |
126 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||||||||||| ||| ||||||| || ||| | |||||||||||| |
|
|
| T |
47601353 |
ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga |
47601427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University