View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17650_high_14 (Length: 318)
Name: NF17650_high_14
Description: NF17650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17650_high_14 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 151 - 318
Target Start/End: Complemental strand, 41743912 - 41743745
Alignment:
| Q |
151 |
aatatatgatgacaatatgtgtggtaccacgttcatatatgttttaagatgaagtccatctgcatatggatagagttgcactgctaaagtataatttaaa |
250 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41743912 |
aatatatgatgacgatatgtgtgataccacgttcatatatgtcttaagatgaagtccatctgcatatggatagagtcgcactgctaaagtataatttaaa |
41743813 |
T |
|
| Q |
251 |
aatttacgttattaagtgataaaatgttgagtttataacaaactttttattaaatatattctttctta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41743812 |
aatttacgttattaagtgataaaatgttgagtttataacatactttttattaaatatattctttctta |
41743745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 41744176 - 41744042
Alignment:
| Q |
11 |
ttatactgatgatgagaatgacgacgtctaattatgatgatgatgaaaataacaatgtttactctttgatgacgatgagaataatatgtttgtcttgaca |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41744176 |
ttatattgatgatgagaatgacgacgtctaattatgatgatgatgaaaataacaatgtttactctttgatgacgatgagaataatatgtttgtcttgaca |
41744077 |
T |
|
| Q |
111 |
ttgtacataatagggagagttttgcattaatatgt |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41744076 |
ttgtacataatagggagagttttgcattaatatgt |
41744042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 24622317 - 24622239
Alignment:
| Q |
12 |
tatactgatgatgagaatgacgacgtctaattatgatgatgatgaaaataacaatgtttactctttgatgacgatgaga |
90 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||||||||||||||||| | | | |||||||| ||||||||||||||||| |
|
|
| T |
24622317 |
tatattgatgatgagaatgatgacgtgtaattatgatgatgatgagattgatgatgtttaccctttgatgacgatgaga |
24622239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 18785223 - 18785357
Alignment:
| Q |
11 |
ttatactgatgatgagaatgacgacgtctaattatgatgatgatgaaaataacaatgtttactctttgatgacgatgag------aataatatgtttgtc |
104 |
Q |
| |
|
||||| |||| |||||||||| || |||||||| |||||| ||||| ||| | ||||||||||||| ||||| ||||| ||| |||||||||| |
|
|
| T |
18785223 |
ttatattgattatgagaatgatgatgtctaattgtgatgaagatgagaatgatgatgtttactctttaatgacaatgagaatgataatgatatgtttgtt |
18785322 |
T |
|
| Q |
105 |
ttgacattgtacataatagggagagttttgcatta |
139 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
18785323 |
ttgacgttgtgcataatagggagagtcctgcatta |
18785357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University