View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17650_high_1_N (Length: 480)
Name: NF17650_high_1_N
Description: NF17650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17650_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 15 - 466
Target Start/End: Complemental strand, 41425041 - 41424591
Alignment:
| Q |
15 |
gaatcttcttgtattaatggttgctctacaaactcaacgagtggcatccattttgctgcatcaatttcaagatcatccacagtgatcgtatatgatagtg |
114 |
Q |
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| T |
41425041 |
gaatcttcttgtattaatggttgctctacaaactcaaccagtggcatccattttgctgcatcaatttcaagatcatccacagtgatcgtagatgatagtg |
41424942 |
T |
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| Q |
115 |
gttttagcatgcagatgaagaacaaatctgatttctcaaaagccacattgtgtacatgcctagaatttatcaccaagttcatcagaattaataactacgt |
214 |
Q |
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| T |
41424941 |
gttttagcatgcagatgaagaacaaatctgatttctcaaaagccacattgtgtacatgcctagaatttatcatcaagttcatcagaattaataactacat |
41424842 |
T |
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| Q |
215 |
tgtataaatgtatattcacagaatcaatggtaactatttcaaatttatttcatccaaaattatgtaaatttcttgatgacatgattggtgttacctgaat |
314 |
Q |
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| T |
41424841 |
tgtataaatgtatattcacagaatcaatggtaactatttcaaatttatttcattcaaaattatgtaaatttcttgatgacatgattggtgttacctgaat |
41424742 |
T |
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| Q |
315 |
gctatgacttcgataaactctgtgtctatctgcaacagctagggctttgtcttcattttaagcaatcgaaacctatcatgcaaccttatgaataagttca |
414 |
Q |
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| T |
41424741 |
gctatgacttcgataaactctgtgtctatctgcaacatcaaaag-aaagtcttcattttaagcaatcgaaacctatcatgcaaccttatgaataagttca |
41424643 |
T |
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| Q |
415 |
atataaggctttttaatttaatttacatcaaaacttaagaatatctcaaagt |
466 |
Q |
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| T |
41424642 |
atataaggctttttaatttaatttacatcaaaacttaagattatctcaaagt |
41424591 |
T |
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