View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17650_high_6 (Length: 347)
Name: NF17650_high_6
Description: NF17650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17650_high_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 23306382 - 23306036
Alignment:
| Q |
1 |
aaacacaaaaaatttcaagcttgtgacgtctggtgttacaatttagcataggagacctaaaatcagtgtgcagcgtgtccgatggctaagatttcagagt |
100 |
Q |
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| T |
23306382 |
aaacacaaaaaatttcaagcttgtgacatgtggtgttacaatttggcataggagacctaaaatcagtgtgcagcgtgttcgatggctaagatttcagagt |
23306283 |
T |
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| Q |
101 |
atgtgtggtggttgaaattgacgtgtgggtggttaaaattcatgtgtgcaacagttcaagtcggcaagagccgtggtttgagcaagtaatcaaatcggag |
200 |
Q |
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| T |
23306282 |
atgtgtggtggttgaaattgacgtgtgggtggttaaaattcatgtgtgcagcagttcaagtcggcaagagccgtggtttgagcaagtaatcaaatcggag |
23306183 |
T |
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| Q |
201 |
ggtcacagttagaggagcttttttcggtaactggttttgtatatttgaaagagcgttttagtttgaagagttatacctagtcgataaaggttgattctat |
300 |
Q |
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| T |
23306182 |
ggtcacagttagaggagcttgtttcggtaactggttgtgtatatttgaaagagcgttttagtttgaagagttatacctagtcgataaaggttgattctat |
23306083 |
T |
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| Q |
301 |
acccatctcagttggcttaacggtgtgcttgagtagttgaagtatgc |
347 |
Q |
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| T |
23306082 |
acccatctcagttggcttaacggtgtgcttgagtagttgaagtatgc |
23306036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 23553700 - 23553605
Alignment:
| Q |
62 |
atcagtgtgcagcgtgtccgatggctaagatttcagagtatgtgtggtggttgaaattgacgtgtg-ggtggttaaaattcatgtgtgcaacagttca |
158 |
Q |
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| T |
23553700 |
atcagcgtgcagcgtgtgcgatggttaagatttcagag--tttgtcgtggttgaaatctccgtgtgcggtggttaaaatccatgtgtgtgacagttca |
23553605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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