View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17650_high_9 (Length: 337)
Name: NF17650_high_9
Description: NF17650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17650_high_9 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 20)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 30241213 - 30240906
Alignment:
| Q |
1 |
aacctcccgttaatctcttccaacctgttacc---ctcatggcgaaacttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaa |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30241213 |
aacctcccgttaatctcttccaacctgttaccgatctcatggcgaaacttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaa |
30241114 |
T |
|
| Q |
98 |
ggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttctcagcatcttcaagaacggc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30241113 |
ggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttctcagcatcttcaagaacggc |
30241014 |
T |
|
| Q |
198 |
tttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggttgcaaattcattttgaaggagagacgtcaaattttcaaac |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| || |||||| |
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|
| T |
30241013 |
tttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggttgcaaattcattttgtaggagagacttcaagttatcaaac |
30240914 |
T |
|
| Q |
298 |
acaactcc |
305 |
Q |
| |
|
|||||||| |
|
|
| T |
30240913 |
acaactcc |
30240906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 59 - 337
Target Start/End: Original strand, 29873521 - 29873797
Alignment:
| Q |
59 |
atcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagca |
158 |
Q |
| |
|
||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29873521 |
atcctctaagttgaccagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgtagccataccttaatagagcg |
29873620 |
T |
|
| Q |
159 |
gtctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggtt |
258 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| || ||||||| |||||||||| ||| || |||| ||||||||||||||| ||||||||||| |
|
|
| T |
29873621 |
gtctgtgacttgtttcttttcagcatcttcaagaacagccttgatcaaatctaaggtggttgatagtttttcagcctttgacttgataccagaaatggta |
29873720 |
T |
|
| Q |
259 |
gcaaattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtctgccattgtttttgtgaaaa |
337 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
29873721 |
gaaaattcattttgaaggagagacatcaaattttcaaacacaactccgagcaaagcgttagccat--tttttgtgaaaa |
29873797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 46 - 337
Target Start/End: Original strand, 30750980 - 30751271
Alignment:
| Q |
46 |
ttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccata |
145 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| | ||| | ||||| |
|
|
| T |
30750980 |
ttgaaagaggtacatcctctcagtcgacaagacttaatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccata |
30751079 |
T |
|
| Q |
146 |
ccttaatagagcagtctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgat |
245 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||||||||||||||| || ||||| | ||||| ||||||| |||||||||||||||||||| || |
|
|
| T |
30751080 |
gcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgcgaactaagttgtctgatagcttttgagcctttgacttaat |
30751179 |
T |
|
| Q |
246 |
tccagaaatggttgcaaattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtctgccattgtttttgtgaaaa |
337 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30751180 |
tccagaaatggttgaaaattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtcagccattgtttttgtgaaaa |
30751271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 46 - 337
Target Start/End: Original strand, 29854645 - 29854934
Alignment:
| Q |
46 |
ttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccata |
145 |
Q |
| |
|
|||| ||||||||||||||| ||| ||| ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
29854645 |
ttgaaagaggttaatcctctaagttgaccagacttgattgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccata |
29854744 |
T |
|
| Q |
146 |
ccttaatagagcagtctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgat |
245 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||| || ||||||| |||||||||| ||| || |||| ||||||||||||||| |
|
|
| T |
29854745 |
ccttaatagagtggtctgtgacttgtttcttttcagcatcttcaagaacagcattgatcaaatctaaggtggttgatagtttttcagcctttgacttgat |
29854844 |
T |
|
| Q |
246 |
tccagaaatggttgcaaattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtctgccattgtttttgtgaaaa |
337 |
Q |
| |
|
|| ||||||||||| ||||||| |||| ||||||||||||||||| | |||||||||||| || |||||||| ||||| |||||||||||| |
|
|
| T |
29854845 |
tctagaaatggttgaaaattcactttgtaggagagacgtcaaattctgaaacacaactccgagtaaagcgtcggccat--tttttgtgaaaa |
29854934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 46 - 337
Target Start/End: Original strand, 30061706 - 30061996
Alignment:
| Q |
46 |
ttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccata |
145 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||| | ||||| |
|
|
| T |
30061706 |
ttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacaccatctttgaggtcttgtaaccata |
30061805 |
T |
|
| Q |
146 |
ccttaatagagcagtctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgat |
245 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||||||||||||||| || ||||| | ||||| ||| ||| ||||||||| |||||||||| || |
|
|
| T |
30061806 |
gcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtttgatagcttttgaacctttgacttaat |
30061905 |
T |
|
| Q |
246 |
tccagaaatggttgcaaattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtctgccattgtttttgtgaaaa |
337 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
30061906 |
tccagaaatggttgaaaattcattttgaaggagagccgtcaaattttcaaacacaactccaagcaaagcgtcggccatt-tttttgtgaaaa |
30061996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 46 - 337
Target Start/End: Complemental strand, 30337297 - 30337007
Alignment:
| Q |
46 |
ttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccata |
145 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||| | ||||| |
|
|
| T |
30337297 |
ttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccata |
30337198 |
T |
|
| Q |
146 |
ccttaatagagcagtctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgat |
245 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||||||||||||||| || ||||| | ||||| ||||||| |||||||||||||||||||| || |
|
|
| T |
30337197 |
gcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtctgatagcttttgagcctttgacttaat |
30337098 |
T |
|
| Q |
246 |
tccagaaatggttgcaaattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtctgccattgtttttgtgaaaa |
337 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
30337097 |
tccagaaatggttgaaaattcattttgatggagagccgtcaaattttcaaacacaactccaagcaaagcgtcggccatt-tttttgtgaaaa |
30337007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 46 - 337
Target Start/End: Original strand, 30484735 - 30485025
Alignment:
| Q |
46 |
ttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccata |
145 |
Q |
| |
|
|||| |||||| |||||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||| | ||||| |
|
|
| T |
30484735 |
ttgaaagaggtaaatcctctgagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccata |
30484834 |
T |
|
| Q |
146 |
ccttaatagagcagtctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgat |
245 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||| | ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
30484835 |
gcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagctttgatgtgaactaagttgtctgatagcttttgagcctttgacttgat |
30484934 |
T |
|
| Q |
246 |
tccagaaatggttgcaaattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtctgccattgtttttgtgaaaa |
337 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
30484935 |
tccagaaatggttgaaaattcattttgaaggagagatgtcaaattttcgaacacaactccaagcaaagcgcaagccatt-tttttgtgaaaa |
30485025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 46 - 337
Target Start/End: Complemental strand, 30712200 - 30711909
Alignment:
| Q |
46 |
ttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccata |
145 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||| | ||||| |
|
|
| T |
30712200 |
ttgaaagaggtaaatcctctcagtcgaaaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccata |
30712101 |
T |
|
| Q |
146 |
ccttaatagagcagtctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgat |
245 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||||||||||||||| || ||||| | ||||| ||||||| ||||||||| ||||||| ||||| |
|
|
| T |
30712100 |
gcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtctgatagcttttgaacctttgatttgat |
30712001 |
T |
|
| Q |
246 |
tccagaaatggttgcaaattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtctgccattgtttttgtgaaaa |
337 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30712000 |
tccagaaatggtagaaaattcattttgaaggagagacgtcaagttttcaaaaacaaatccaagcaaagcgtcagccattgtttttgtgaaaa |
30711909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 46 - 330
Target Start/End: Complemental strand, 30676060 - 30675776
Alignment:
| Q |
46 |
ttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccata |
145 |
Q |
| |
|
|||||||||| | ||||||| ||| ||| ||||||||| || |||||||||||||||||||||||||||||||| |||||||||| | ||| | ||||| |
|
|
| T |
30676060 |
ttgagagaggatgatcctctaagttgaccagacttgattgaatactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccata |
30675961 |
T |
|
| Q |
146 |
ccttaatagagcagtctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgat |
245 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||||||||||||||| || ||||| | ||||| ||| ||| ||||||||| ||||||||||||| |
|
|
| T |
30675960 |
gcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtttgatagcttttgaacctttgacttgat |
30675861 |
T |
|
| Q |
246 |
tccagaaatggttgcaaattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtctgccattgttttt |
330 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
30675860 |
tccagaaatggttgaaaattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtcagccatttttttt |
30675776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 30437084 - 30437394
Alignment:
| Q |
1 |
aacctcccgttaatctcttccaacctgttacc---ctcatggcgaaacttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaa |
97 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| || |||||||||||| | ||| || ||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
30437084 |
aacctccctgtaatctctttcaacctgttaccgatcttatggcgaaactttaaagatgtgaattttctcagtcgactagacttgatcgaacactcatcaa |
30437183 |
T |
|
| Q |
98 |
ggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttctcagcatcttcaagaacggc |
197 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| | ||| |||||||||||||| || |||| |||||||| |||| ||||||||||||||||| || |
|
|
| T |
30437184 |
ggatgtcatcgagcacataaacagcatctttgaggtcttgtagccataccttaatgaagttgtctttgacttgtctcttttcagcatcttcaagaacagc |
30437283 |
T |
|
| Q |
198 |
tttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggttgcaaattcattttgaaggagagacgtcaaattttcaaac |
297 |
Q |
| |
|
||||| | |||||||| ||| || |||| |||||||||||||||||||||||| || | ||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
30437284 |
cttgatgtcaactaaggtggttgataggttttcagcctttgacttgattccagaaatagtagaaaattcattttgaagcagagatatcaaattctcaaac |
30437383 |
T |
|
| Q |
298 |
acaactccaag |
308 |
Q |
| |
|
||||||||||| |
|
|
| T |
30437384 |
acaactccaag |
30437394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 75 - 323
Target Start/End: Original strand, 30207885 - 30208133
Alignment:
| Q |
75 |
agacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttc |
174 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| | ||||||| ||| |
|
|
| T |
30207885 |
agactcgatcgagcactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccatacctttatagagcgattgatgacttgcttc |
30207984 |
T |
|
| Q |
175 |
ttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggttgcaaattcattttgaa |
274 |
Q |
| |
|
| |||||||||||||||||| || |||| || |||||||||| ||| ||||| |||||||| |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
30207985 |
tgctcagcatcttcaagaacagcgttgaccaaatctaaggtggttgaaagcttctgagccttggacttgattccagaaatggtggccaattcattttgaa |
30208084 |
T |
|
| Q |
275 |
ggagagacgtcaaattttcaaacacaactccaagcaaagcgtctgccat |
323 |
Q |
| |
|
|||||| ||||||| | |||||||||||||| || ||||| ||||| |
|
|
| T |
30208085 |
caagagacttcaaattctgtaacacaactccaagtaaggcgtcagccat |
30208133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 91 - 324
Target Start/End: Original strand, 30476754 - 30476987
Alignment:
| Q |
91 |
tcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttctcagcatcttcaa |
190 |
Q |
| |
|
|||||||| |||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |
|
|
| T |
30476754 |
tcatcaagaatatcatcaagcacatatacagcatctttgagttgttggagccataccttaatagagcggtctgtgacctgtttctgctcagcatcttcaa |
30476853 |
T |
|
| Q |
191 |
gaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggttgcaaattcattttgaaggagagacgtcaaatt |
290 |
Q |
| |
|
|||| || ||||||| ||| |||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
30476854 |
gaacagccttgatcagatccaaggtggttgacaacttttcagcctttgatgtgattccagaaatggttgcaaattcattttgaacaagagataacaaatt |
30476953 |
T |
|
| Q |
291 |
ttcaaacacaactccaagcaaagcgtctgccatt |
324 |
Q |
| |
|
||||| |||||||| ||||| || ||||||||| |
|
|
| T |
30476954 |
ctcaaatacaactcctagcaaggcctctgccatt |
30476987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 61 - 323
Target Start/End: Complemental strand, 17417425 - 17417163
Alignment:
| Q |
61 |
cctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagt |
160 |
Q |
| |
|
||||| || |||| ||||| ||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| | |
|
|
| T |
17417425 |
cctctaagccgaccagactcgattgagcactcatcaagaatatcatctagcacataaacaacatctttgagttgttgaagccataccttgttagagcgat |
17417326 |
T |
|
| Q |
161 |
ctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggttgc |
260 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| || ||||||| ||| |||||| ||| ||||||| |||||||||| |||||| || ||||||| |
|
|
| T |
17417325 |
ctgtgacttgtttatgctcagcatcttcaagaacagccttgatcagatccaaggtggttgatagcttttcgacctttgacttaattccaaaagtggttgc |
17417226 |
T |
|
| Q |
261 |
aaattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtctgccat |
323 |
Q |
| |
|
|| ||||||||||| ||||| |||||| ||||||||||||||||| || || |||||||| |
|
|
| T |
17417225 |
aatttcattttgaaccagagataacaaattctcaaacacaactccaagtaaggcttctgccat |
17417163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 122 - 330
Target Start/End: Complemental strand, 30520321 - 30520113
Alignment:
| Q |
122 |
catctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctga |
221 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |
|
|
| T |
30520321 |
catctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacggccttgatcaaatctaaggtggttga |
30520222 |
T |
|
| Q |
222 |
cagcttttgagcctttgacttgattccagaaatggttgcaaattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtctgcc |
321 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||| ||||| || ||| |
|
|
| T |
30520221 |
tagctttagagccttggacttgattccagaaatggttgcaaattcattttgaacaagagatagtagattttcaaacacaacaccaagtaaagcttcagcc |
30520122 |
T |
|
| Q |
322 |
attgttttt |
330 |
Q |
| |
|
||| ||||| |
|
|
| T |
30520121 |
atttttttt |
30520113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 122 - 330
Target Start/End: Complemental strand, 30560661 - 30560453
Alignment:
| Q |
122 |
catctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctga |
221 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |
|
|
| T |
30560661 |
catctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacggccttgatcaaatctaaggtggttga |
30560562 |
T |
|
| Q |
222 |
cagcttttgagcctttgacttgattccagaaatggttgcaaattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtctgcc |
321 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||| ||||| || ||| |
|
|
| T |
30560561 |
tagctttagagccttggacttgattccagaaatggttgcaaattcattttgaacaagagatagtagattttcaaacacaacaccaagtaaagcttcagcc |
30560462 |
T |
|
| Q |
322 |
attgttttt |
330 |
Q |
| |
|
||| ||||| |
|
|
| T |
30560461 |
atttttttt |
30560453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 75 - 281
Target Start/End: Original strand, 30401440 - 30401646
Alignment:
| Q |
75 |
agacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttc |
174 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| |||| |||||||| || |
|
|
| T |
30401440 |
agactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttggagccataccttaatatagctgtctttgacttgtctc |
30401539 |
T |
|
| Q |
175 |
ttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggttgcaaattcattttgaa |
274 |
Q |
| |
|
|||||||||||| ||||||| || | ||| || ||||| | ||| || |||| |||||||||||||||||||||||||| | ||||||| |||| | |
|
|
| T |
30401540 |
ttctcagcatctacaagaacagcctcgatgtgatttaaggaggttgataggtttttggcctttgacttgattccagaaatggtagaaaattcactttgta |
30401639 |
T |
|
| Q |
275 |
ggagaga |
281 |
Q |
| |
|
||||||| |
|
|
| T |
30401640 |
ggagaga |
30401646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 69 - 274
Target Start/End: Complemental strand, 30329590 - 30329385
Alignment:
| Q |
69 |
tcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtgact |
168 |
Q |
| |
|
||||| ||||| |||| |||||||||||||||||||||| |||||||| | | ||||||||| |||||| ||||||| ||||||||||| ||||| |||| |
|
|
| T |
30329590 |
tcgaccagactcgatcaagcactcatcaaggatatcatcaagcacatatatatcatctttgatttgttgaagccatatcttaatagagcggtctgagact |
30329491 |
T |
|
| Q |
169 |
tgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggttgcaaattcat |
268 |
Q |
| |
|
|| || | |||| ||||||||||||| | ||||| | |||||||||| ||| ||||||||||| || ||||||||| |||||||||| | ||||| |
|
|
| T |
30329490 |
tgcttatgctcaacatcttcaagaacaaccttgataagatctaaggtggttgatagcttttgagcattaaacttgattcaggaaatggttgaacattcac |
30329391 |
T |
|
| Q |
269 |
tttgaa |
274 |
Q |
| |
|
|||||| |
|
|
| T |
30329390 |
tttgaa |
30329385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 79 - 273
Target Start/End: Original strand, 17984257 - 17984451
Alignment:
| Q |
79 |
ttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttct |
178 |
Q |
| |
|
|||||||| || ||||| ||||||||||| |||||| | || ||||||||||||| |||||||||| | |||||| | ||||| | || ||||| | |
|
|
| T |
17984257 |
ttgatcgaacattcatctaggatatcatcaagcacaaacaccgcatctttgagttgctgcagccatatttgaatagaacgatctgtcaaatgcttctttt |
17984356 |
T |
|
| Q |
179 |
cagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggttgcaaattcattttga |
273 |
Q |
| |
|
|||| ||||| ||||| || || || | ||||||||| ||| || |||| |||||||||||||||| |||| | |||||||||||||||||| |
|
|
| T |
17984357 |
cagcgtcttcgagaacagcattaataagttctaaggtggttgatagtttttcagcctttgacttgattgcagatagagttgcaaattcattttga |
17984451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 29608255 - 29608133
Alignment:
| Q |
93 |
atcaaggatatcatcgagcaca---taaacaacatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttctcagcatcttca |
189 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||| |||| |||||| ||||||||||| ||||||| ||||||| |||||| | || |||||||||| |
|
|
| T |
29608255 |
atcaagaatatcatcgagcactacgtaaactgcatccttgaattgttgtagccatacctttatagagccatctgtgatttgtttgtgctgagcatcttca |
29608156 |
T |
|
| Q |
190 |
agaacggctttgatcatatctaa |
212 |
Q |
| |
|
|||| ||| ||||| |||||||| |
|
|
| T |
29608155 |
agaagggccttgattatatctaa |
29608133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 29614372 - 29614295
Alignment:
| Q |
133 |
tgttgcagccataccttaatagagcagtctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatct |
210 |
Q |
| |
|
||||| ||||||||||| ||||||| |||||||| ||||| | |||| |||||||||||||||| ||||| |||||| |
|
|
| T |
29614372 |
tgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaacggccttgattatatct |
29614295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 58 - 337
Target Start/End: Complemental strand, 20295342 - 20295064
Alignment:
| Q |
58 |
aatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagc |
157 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||| |||||||||| | ||| | |||| |||||||||| |
|
|
| T |
20295342 |
aatcctctcagtcgaccagactcgatcgagtactcatcaaggatatcaccgagcacataaacagcatctttgaggtcttgtaaccattgcttaatagaga |
20295243 |
T |
|
| Q |
158 |
agtctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggt |
257 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||| || ||||| | ||||| ||||||| |||||| ||||||||||| |||||||||||||||| |
|
|
| T |
20295242 |
gttctttgaattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtctgatagctttcgagcctttgacctgattccagaaatggt |
20295143 |
T |
|
| Q |
258 |
tgcaaattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtctgccattgtttttgtgaaaa |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
20295142 |
tgcaaattcattttgaaggagagacgtcaaattttcagacacaactccaagcaaagcgtcggccatt-tttttgtgaaaa |
20295064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 67 - 308
Target Start/End: Original strand, 52353316 - 52353557
Alignment:
| Q |
67 |
agtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtga |
166 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||||||||| || |||||| ||||||||||||| || |||||||| |||||||||| |||||||| |
|
|
| T |
52353316 |
agtcgactagatttgatcgaacattcatcaaggatatcatcgagaacgtaaacagcatctttgagttgctgaagccatactttaatagagcggtctgtga |
52353415 |
T |
|
| Q |
167 |
cttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggttgcaaattc |
266 |
Q |
| |
|
||||||||| |||||||||||||||||| || ||||| | |||||| |||| |||||| |||| ||| |||||||||||| ||| | ||| | |||||| |
|
|
| T |
52353416 |
cttgtttctgctcagcatcttcaagaactgccttgatgagatctaacgtgtttgacaggttttcagcttttgacttgattgaagatacggtggaaaattc |
52353515 |
T |
|
| Q |
267 |
attttgaaggagagacgtcaaattttcaaacacaactccaag |
308 |
Q |
| |
|
||||||||| ||||| || ||||| | |||||||| ||||| |
|
|
| T |
52353516 |
attttgaagtagagatgttaaattgtggaacacaacaccaag |
52353557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 61 - 324
Target Start/End: Complemental strand, 25292704 - 25292441
Alignment:
| Q |
61 |
cctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagt |
160 |
Q |
| |
|
||||| ||||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
25292704 |
cctctaagtcgactagatttgatcaatcactcatcaaggatatcatcgagcacatatacaacatctttgagttgttgtagccataccttaatagagcgat |
25292605 |
T |
|
| Q |
161 |
ctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggttgc |
260 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || | |||| ||| |||||| ||| ||||||| ||| ||||||||||||| |||||||||||| |
|
|
| T |
25292604 |
ctgtgacttgtttctgctcagcatcttcaagaacagcctatatcagatccaaggtgattgatagcttttcagcttttgacttgattctagaaatggttgc |
25292505 |
T |
|
| Q |
261 |
aaattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtctgccatt |
324 |
Q |
| |
|
||||||||||||||| || ||| || ||| ||||| ||||||||||| || ||||| |||||| |
|
|
| T |
25292504 |
aaattcattttgaagcagggacaacatattctcaaatacaactccaagtaatgcgtccgccatt |
25292441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 26708603 - 26708913
Alignment:
| Q |
1 |
aacctcccgttaatctcttccaacctgttacc---ctcatggcgaaacttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaa |
97 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| || |||||||||||| | |||||| ||| | ||||||||||||||||||||||||| ||||||| |
|
|
| T |
26708603 |
aacctccctgtaatctctttcaacctgttaccgatcttatggcgaaactttaaagaggtgaattttttcagtcgactagacttgatcgagcattcatcaa |
26708702 |
T |
|
| Q |
98 |
ggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttctcagcatcttcaagaacggc |
197 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| | ||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26708703 |
ggatgtcatcgagcacatatacaacatctttgaggtcttgtagccataccttaataaagttgtctgtgacttgtctcttctcagcatcttcaagaacggc |
26708802 |
T |
|
| Q |
198 |
tttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggttgcaaattcattttgaaggagagacgtcaaattttcaaac |
297 |
Q |
| |
|
| || | |||||||| ||| || |||| ||||||||||||||||||| ||||||| | ||||||| ||||||| |||||| ||||||| || ||| |
|
|
| T |
26708803 |
cctaatgtcaactaaggtggttgataggttttcagcctttgacttgattccataaatggtagaaaattcaatttgaagcagagacatcaaattctcgaac |
26708902 |
T |
|
| Q |
298 |
acaactccaag |
308 |
Q |
| |
|
||||||||||| |
|
|
| T |
26708903 |
acaactccaag |
26708913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 78 - 311
Target Start/End: Original strand, 7100772 - 7101005
Alignment:
| Q |
78 |
cttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttc |
177 |
Q |
| |
|
|||||| || || ||||||||||||||||| |||||||| || ||||||||||||| |||||||||| | |||||||| |||||| | ||| ||||| |
|
|
| T |
7100772 |
cttgatggaacattcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttt |
7100871 |
T |
|
| Q |
178 |
tcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggttgcaaattcattttgaagga |
277 |
Q |
| |
|
||||| ||||||||||| || || || | ||||||||| ||| || |||| ||||||||||||||||||||| | ||||||||||| |||| ||| | |
|
|
| T |
7100872 |
tcagcgtcttcaagaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaa |
7100971 |
T |
|
| Q |
278 |
gagacgtcaaattttcaaacacaactccaagcaa |
311 |
Q |
| |
|
|||| |||| || ||||||||||| ||||||| |
|
|
| T |
7100972 |
gagatgtcaggttctcaaacacaacatcaagcaa |
7101005 |
T |
|
Back To:
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Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 67 - 324
Target Start/End: Complemental strand, 7580479 - 7580222
Alignment:
| Q |
67 |
agtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtga |
166 |
Q |
| |
|
|||||||| || ||||| | |||||||||||||||||||| |||||||| || ||||||||||||| |||| ||||| | |||||| | ||| || | |
|
|
| T |
7580479 |
agtcgactggatttgattaaacactcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcaaccatatttgaatagatcggtcagtta |
7580380 |
T |
|
| Q |
167 |
cttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggttgcaaattc |
266 |
Q |
| |
|
||| ||||| ||||| |||| |||||| || ||||||| |||||||| ||| ||||||||||||||||||||||||||| | | |||| |||||| |
|
|
| T |
7580379 |
attgcttcttttcagcgtcttgaagaacagccttgatcagttctaaggttcttgatagcttttgagcctttgacttgattccaaatagagttgaaaattc |
7580280 |
T |
|
| Q |
267 |
attttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtctgccatt |
324 |
Q |
| |
|
||||||| |||||| ||| || | ||||||||| ||||| ||||| || |||||| |
|
|
| T |
7580279 |
gttttgaaccagagacatcaggttgtgaaacacaacaccaagtaaagcctcggccatt |
7580222 |
T |
|
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