View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_109 (Length: 256)
Name: NF17651_high_109
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_109 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 17928722 - 17928944
Alignment:
| Q |
1 |
tgtttatgatttatttggggttcaaatcaattggcataagagagattcacatgtgtgttcaacaatcttccatcaaatcaaacaaattccatgagttggg |
100 |
Q |
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| T |
17928722 |
tgtttgtgatttatttggggttcaaatcaattgacataagagagattcacatgtgtgttcaacaatcttccatcaaatcaaacaaattccacgagttggg |
17928821 |
T |
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| Q |
101 |
atcctctcaa-ttttttatctccatttttcatctccattactatagttttgaaatgtatattaaatgattggacccccaaatgccacattattgtatata |
199 |
Q |
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| T |
17928822 |
atcctctcaatttttttatctccatttttcatctccattactatagttttgaaatgtatattaaatgattggacccccaaatgccacattattg----ta |
17928917 |
T |
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| Q |
200 |
tttatgttattaaaacttcgataatag |
226 |
Q |
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||||||||||||||||||||||||||| |
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| T |
17928918 |
tttatgttattaaaacttcgataatag |
17928944 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 39650477 - 39650409
Alignment:
| Q |
131 |
tctccattactatagttttgaaatgtatattaaatgattgga-cccccaaatgccacattattgtatat |
198 |
Q |
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| T |
39650477 |
tctccattactgtagttttgaagtgtatattaaataattggatccaccaaatttcacattattgcatat |
39650409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 34262511 - 34262590
Alignment:
| Q |
118 |
tctccatttttcatctccattactatagttttgaaatgtatattaaatgattggaccc-ccaaatgccacattattgtat |
196 |
Q |
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| T |
34262511 |
tctccattttcgctctccattactagagttttgaagtatatattaaataattggacccaccaaatgtcacactgttgtat |
34262590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 30587037 - 30586984
Alignment:
| Q |
99 |
ggatcctctcaattttttatctccatttttcatctccattactatagttttgaa |
152 |
Q |
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| T |
30587037 |
ggatcctttccattttgtctctccattttccctctccattactatagttttgaa |
30586984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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