View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_110 (Length: 253)
Name: NF17651_high_110
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_110 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 2492933 - 2492695
Alignment:
| Q |
1 |
gagcattaggttccacatgtaagaatgaagaaaatactactgtcaatggagtcatattgcaaactttattgaattctcttgcttcaaacgtggttgatca |
100 |
Q |
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| T |
2492933 |
gagcattaggttccacatgtaagaatgaagaaaatactactgtcaatggagtcatattgcaaactttattgaattctcttgcttcaaacgtggttgatca |
2492834 |
T |
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| Q |
101 |
ccatggattttaccaaaccattgcaggagaaaacaacagcaggatttatggttcaatattatgtagaggagacatatctgctaacaattgttctgattgt |
200 |
Q |
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| T |
2492833 |
ccatggattttaccaaaccattgcaggagaaaacaacagcaggatttatggttcaatattatgtagaggagacatatctgctaacaattgttctgattgt |
2492734 |
T |
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| Q |
201 |
gtccgtaactccacaatagaagcttcaaatgtttttcct |
239 |
Q |
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| T |
2492733 |
gtccgtaactccacaatagaagcttcaaatgtttttcct |
2492695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 42 - 231
Target Start/End: Complemental strand, 2489611 - 2489422
Alignment:
| Q |
42 |
gtcaatggagtcatattgcaaactttattgaattctcttgcttcaaacgtggttgatcaccatggattttaccaaaccattgcaggagaaaacaacagca |
141 |
Q |
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| T |
2489611 |
gtcaatgaagacatattccataccttattggattctcttgcttcaaatgtggttgatcaccaaggattttaccaaaccactgtaggagaaaactccagca |
2489512 |
T |
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| Q |
142 |
ggatttatggttcaatattatgtagaggagacatatctgctaacaattgttctgattgtgtccgtaactccacaatagaagcttcaaatg |
231 |
Q |
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| T |
2489511 |
gggtttatggttcaatattatgtagaggagacatatctgctaacaattgttctatctgtgtccttaactctacaagagtagcgtcaaatg |
2489422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 61 - 216
Target Start/End: Complemental strand, 2496003 - 2495848
Alignment:
| Q |
61 |
aaactttattgaattctcttgcttcaaacgtggttgatcaccatggattttaccaaaccattgcaggagaaaacaacagcaggatttatggttcaatatt |
160 |
Q |
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|||| |||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||| | |||| |||||||| ||||||| |
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| T |
2496003 |
aaaccttattggattctcttgcttcaaacgtcgttgatagccatggattttaccaaaccattgtaggaaaaaagcctaacaggctttatggtacaatatt |
2495904 |
T |
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| Q |
161 |
atgtagaggagacatatctgctaacaattgttctgattgtgtccgtaactccacaa |
216 |
Q |
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||||||||| |||||||||||||| ||||||| | ||||||||| |||||| |||| |
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| T |
2495903 |
atgtagaggggacatatctgctaataattgttttaattgtgtccttaactctacaa |
2495848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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