View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_116 (Length: 250)
Name: NF17651_high_116
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_116 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 7563834 - 7564064
Alignment:
| Q |
20 |
catcttgtttcacttgttggatattgtatttctggtggccaaagaatgttggtctatgaatttatttccaataacacattggagtatcatctccacggaa |
119 |
Q |
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| T |
7563834 |
catcttgtttcacttgttggatattgtatttctggtggccaaagaatgttggtctatgaatttatttccaataacacattggagtatcatctccacggaa |
7563933 |
T |
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| Q |
120 |
agggtcgtcctaccatggattggccgacgagaatgaggatcgcaattggttctgctaaagggcttgcttatcttcatgaggattgtgagattcttgctcc |
219 |
Q |
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| T |
7563934 |
agggtcgtcctaccatggattggccgacgagaatgaggatcgcaattggttctgctaaagggcttgcttatcttcatgaggattgtgagattcttgctcc |
7564033 |
T |
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| Q |
220 |
ccttaattaatatgatctttgtctttatatt |
250 |
Q |
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| T |
7564034 |
ccttaattaatatgatctttgtctttatatt |
7564064 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 33145741 - 33145653
Alignment:
| Q |
20 |
catcttgtttcacttgttggatattgtatttctggtggccaaagaatgttggtctatgaatttatttccaataacacattggagtatca |
108 |
Q |
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| T |
33145741 |
catcttgtgtcgcttgttggatattgtgtttctggtggacagagaatgttggtttatgaatttgttccaaataaaactttggaatatca |
33145653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 33145531 - 33145448
Alignment:
| Q |
128 |
cctaccatggattggccgacgagaatgaggatcgcaattggttctgctaaagggcttgcttatcttcatgaggattgtgagatt |
211 |
Q |
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| T |
33145531 |
cctaccatggattggcctactagaatgagaattgcattaggatctgctagaggacttgcttaccttcatgaagattgtaagatt |
33145448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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