View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17651_high_118 (Length: 249)
Name: NF17651_high_118
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_118 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 38169812 - 38170050
Alignment:
| Q |
1 |
tgtttaaggttctaatgttcttgattattaattaatttcaattttaagtgattaactcgatatgtttcttctgtgttttattaacatggcttctttgtaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38169812 |
tgtttaaggttctaatgttctggattattaattaatttcaattttaagtgattaactcgatatgtttcttctgtgttttattaacatggcttctttgtaa |
38169911 |
T |
|
| Q |
101 |
tcacatgaaagctatgaaaaaattatactagtcttgaactaactaagcttgtgtttggataaacatttaccaatccaacaccgcgtcccaatgcacggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38169912 |
tcacatgaaagctatgaaaaaattatactagtcttgaattaactaagcttgtgtttggataaacatttaccaatccaaccccgcgtcccaatgcacggtt |
38170011 |
T |
|
| Q |
201 |
gctgtgaaaaatctgatgctaatatatcaagctcctgtg |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38170012 |
gctgtgaaaaatctgatgctaatatatcaagcttctgtg |
38170050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 20791158 - 20791075
Alignment:
| Q |
150 |
tgtgtttggataaacatttaccaatccaacaccgcgtcccaatgcacggttgctgtgaaaaatctgatgctaatatatcaagct |
233 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||||||||||||||||||||| |||| || ||||| |||| ||||||||||| |
|
|
| T |
20791158 |
tgtgtttgaataaacatttgccaatccattaccgcgtcccaatgcacggttgccgtgagaattctgaagctagtatatcaagct |
20791075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 26135621 - 26135539
Alignment:
| Q |
151 |
gtgtttggataaacatttaccaatccaacaccgcgtcccaatgcacggttgctgtgaaaaatctgatgctaatatatcaagct |
233 |
Q |
| |
|
|||||||||||| | ||| |||||| || ||||||||||||||||||||||| ||||||| || || |||| ||||||||||| |
|
|
| T |
26135621 |
gtgtttggataagcgtttgccaatctaataccgcgtcccaatgcacggttgccgtgaaaattcagaagctagtatatcaagct |
26135539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 26937592 - 26937660
Alignment:
| Q |
171 |
caatccaacaccgcgtcccaatgcacggttgctgtgaaaaatctgatgctaatatatcaagctcctgtg |
239 |
Q |
| |
|
|||||||| || ||||||||||||||||| | ||||||| ||||| |||| ||| ||||||| ||||| |
|
|
| T |
26937592 |
caatccaatactgcgtcccaatgcacggtcaccgtgaaaattctgaagctagtatgtcaagcttctgtg |
26937660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University