View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17651_high_123 (Length: 246)
Name: NF17651_high_123
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_123 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 32845026 - 32845256
Alignment:
| Q |
1 |
tgtcatgttttccaccaagaatgtattgacctatggcttgaatctcataagacatgccccgtttgtcgaacaaaccttgattcacctcccaaccaaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32845026 |
tgtcatgttttccaccaagaatgtattgacctatggcttgaatctcataagacatgccccgtttgtcgaacagaccttgattcacctcccaaccaaatgt |
32845125 |
T |
|
| Q |
101 |
ccaaacacggggaaggcaaccacaacaacaacaataacaaccttaatgcacaagagggtatgacatcgttaccatgcggtgacatacacattgatgttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
32845126 |
ccaaacacggggaaggcaaccacaacaacaacaataacaaccttaatgtgcaagagggtatgacatcgttaccatgcgatgatatacacattgatgttag |
32845225 |
T |
|
| Q |
201 |
aggagaggaaagtgacaatgttggtgaaatc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32845226 |
aggagaggaaagtgacaatgttggtgaaatc |
32845256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 27745349 - 27745564
Alignment:
| Q |
4 |
catgttttccaccaagaatgtattgacctatggcttgaatctcataagacatgccccgtttgtcgaacaaaccttgattcacctcccaaccaaatgtcca |
103 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| ||| |||||||| || ||||||||||| | |||||| |||||||||||||| ||| | |
|
|
| T |
27745349 |
catgttttccaccaagaatgtatcgacctatggtttgaaaatcacaagacatgtcctgtttgtcgaaccgatcttgatgtacctcccaaccaaacgtcaa |
27745448 |
T |
|
| Q |
104 |
aacacggggaaggcaaccacaacaacaacaataacaaccttaatgcacaagagggtatgacatcgttaccatgcggtgacatacacattgatgttagagg |
203 |
Q |
| |
|
||||||||||| | | ||||||||| ||| |||||| |||||||||||||||||||||| || ||||| ||| ||| | || ||||||||||||||| |
|
|
| T |
27745449 |
aacacggggaatgttgcaacaacaacaccaacaacaacgttaatgcacaagagggtatgacctcattaccgtgcaatgatacacgcattgatgttagagg |
27745548 |
T |
|
| Q |
204 |
agaggaaagtgacaat |
219 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
27745549 |
agaggaaagtgtcaat |
27745564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University